Top 10 genes with highest correlation to Rv2407/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2701c/suhB | (cc=0.5303) | info on Rv2701c/suhB |
| Rv3089/fadD13 | (cc=0.4985) | info on Rv3089/fadD13 |
| Rv1737c/narK2 | (cc=0.4984) | info on Rv1737c/narK2 |
| Rv0447c/ufaA1 | (cc=0.4979) | info on Rv0447c/ufaA1 |
| Rv3585/radA | (cc=0.4947) | info on Rv3585/radA |
| Rv1226c/- | (cc=0.4935) | info on Rv1226c/- |
| Rv3265c/wbbL1 | (cc=0.4904) | info on Rv3265c/wbbL1 |
| Rv1001/arcA | (cc=0.4887) | info on Rv1001/arcA |
| Rv0969/ctpV | (cc=0.4782) | info on Rv0969/ctpV |
| Rv2370c/- | (cc=0.4723) | info on Rv2370c/- |
Correlation of Rv2407/- with Rv2701c/suhB
Normalized LFCs for Rv2407/-:
(description and provenance of datasets)
| Rv2407/- | Rv2701c/suhB | |
| Fe_supp_jason_reseq | -0.867 | -1.904 |
| low_pH_jason_reseq | -0.539 | -1.004 |
| NO_jason_reseq | 0.071 | -0.163 |
| B6_jason_reseq | -0.483 | -0.536 |
| MHCII_jason_reseq | 0.108 | -0.453 |
| Isoniazid02 | 0.54 | 0.26 |
| Rifampicin4 | 0.154 | 0.322 |
| Ethambutol3 | 1.069 | 0.946 |
| Meropenem3 | 0.627 | 1.804 |
| Vancomycin16 | 0.608 | 0.34 |
| Rv2680_day32 | 0.851 | -0.475 |
| H37Rv_KO_MarP | -0.535 | -0.134 |
| hypoxia_3wks | -0.152 | -0.722 |
| hypoxia_6wks | -0.04 | -0.284 |
| glycerol | -0.118 | 0.325 |
| cholesterol | -0.351 | 1.235 |
| AJ | -0.437 | -0.141 |
| Bibs02 | 0.427 | 0.23 |
| Bibs02c | -0.3 | 0.105 |
| BL6 | -0.334 | 0.31 |
| BL6a | -0.433 | -0.433 |
| BXD01 | -0.348 | -1.354 |
| BXD010 | 0.124 | -0.149 |
| BXD011 | -0.259 | -0.959 |
| BXD03 | -0.135 | -0.57 |
| BXD04 | -1.257 | -0.37 |
| BXD05 | 0.107 | -0.727 |
| BXD06 | -0.532 | -0.571 |
| BXD07 | -0.1 | 0.14 |
| BXD08 | 0.175 | -0.65 |
| BXD09 | 0.192 | -0.816 |
| CAST | 0.128 | 0.499 |
| CCcont | -0.424 | -1.223 |
| DS01 | -0.373 | -0.448 |
| DS02 | -0.249 | -0.413 |
| DS04 | 0.492 | -0.176 |
| DS0c | -0.526 | -0.025 |
| GP01 | 1.309 | 1.237 |
| GP02 | -0.195 | 1.199 |
| GP0c | 0.276 | -0.222 |
| NOD | 1.054 | 0.493 |
| NZO | 0.217 | -0.577 |
| PWK | 0.098 | 0.475 |
| H37Rv_KO_CtpC | -0.14 | -1.403 |
| H37Rv_KO_CtpD | 0.537 | -1.06 |
| H37Rv_KO_Rv1272 | -0.037 | -1.481 |
| H37Rv_KO_SugABC | 0.897 | -0.441 |
| H37Rv_KO_MbtN | -0.125 | -0.927 |
| Trans05 | 0.414 | -0.236 |
| macrophage_unactivated | -0.716 | -1.979 |
| IL1 | -0.353 | -0.35 |
| Rapamycin | -0.15 | -0.193 |
| Tcell | -0.189 | -1.916 |
| GMCSF | -0.428 | -0.863 |
| IFNab | -0.423 | -1.128 |
| IFNg | 0.174 | 0.251 |
| IFNg_GMCSF1 | 0.456 | -0.405 |
| Rv1432_day32 | 0.623 | -0.639 |
| Rv1565c_day32 | 0.33 | -0.325 |
| secA2_input | 1.647 | 0.85 |
| delta_Rv3594 | -0.168 | -0.337 |
| delta_Rv3717 | 0.011 | 0.413 |
| delta_Rv3811 | -0.294 | -0.247 |
| delta_Rv0954 | -0.093 | -0.509 |
| PonA1 | -0.361 | 0.13 |
| EccD1_KO | 1.375 | 0.829 |
| EspI_KO | 1.124 | 1.446 |
| PE35_KO | 0.493 | 0.032 |
| PPE68_KO | 0.541 | -0.544 |
| glycerol2 | -0.105 | -0.75 |
| lignocerate | -0.012 | -1.076 |
| oleate | 0.238 | -0.298 |
| phosphatidylcholine | 0.099 | -0.926 |
| acetate | 0.151 | -1.709 |
| glucAc | 0.144 | -1.251 |
| Rv0950ko | 0.85 | 0.181 |
| Rv1096ko | 0.787 | 1.252 |
| Rv3684ko | 0.717 | 1.238 |
| delta_otsA_trehalose | 1.7 | 0.972 |