Top 10 genes with highest correlation to Rv2228c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2973c/recG | (cc=0.4745) | info on Rv2973c/recG |
| Rv1067c/PE_PGRS19 | (cc=0.474) | info on Rv1067c/PE_PGRS19 |
| Rv2401/- | (cc=0.4534) | info on Rv2401/- |
| Rv2976c/ung | (cc=0.4413) | info on Rv2976c/ung |
| Rv2169c/- | (cc=0.4359) | info on Rv2169c/- |
| Rv0003/recF | (cc=0.4274) | info on Rv0003/recF |
| Rv3262/fbiB | (cc=0.425) | info on Rv3262/fbiB |
| Rv0778/cyp126 | (cc=0.4213) | info on Rv0778/cyp126 |
| Rv3674c/nth | (cc=0.4195) | info on Rv3674c/nth |
| Rv2922c/smc | (cc=0.4175) | info on Rv2922c/smc |
Correlation of Rv2228c/- with Rv2922c/smc
Normalized LFCs for Rv2228c/-:
(description and provenance of datasets)
| Rv2228c/- | Rv2922c/smc | |
| Fe_supp_jason_reseq | 0.268 | 0.33 |
| low_pH_jason_reseq | -1.134 | 0.44 |
| NO_jason_reseq | 0.0 | 0.244 |
| B6_jason_reseq | 1.206 | -1.074 |
| MHCII_jason_reseq | 0.315 | -0.131 |
| Isoniazid02 | -0.49 | -0.706 |
| Rifampicin4 | -0.523 | 0.079 |
| Ethambutol3 | -0.153 | -0.4 |
| Meropenem3 | 0.138 | 0.231 |
| Vancomycin16 | -0.512 | -1.512 |
| Rv2680_day32 | 0.0 | -1.31 |
| H37Rv_KO_MarP | -1.065 | -0.737 |
| hypoxia_3wks | -0.427 | -0.475 |
| hypoxia_6wks | -0.223 | -0.426 |
| glycerol | 2.07 | 0.876 |
| cholesterol | 0.159 | 0.96 |
| AJ | 0.0 | 0.069 |
| Bibs02 | -0.109 | 1.431 |
| Bibs02c | -0.887 | 0.823 |
| BL6 | -0.074 | 1.235 |
| BL6a | -0.377 | 0.654 |
| BXD01 | 0.552 | 0.28 |
| BXD010 | 0.206 | 0.849 |
| BXD011 | -0.335 | 0.578 |
| BXD03 | 0.0 | 0.738 |
| BXD04 | 0.932 | 1.696 |
| BXD05 | -0.256 | 0.256 |
| BXD06 | 0.513 | 0.552 |
| BXD07 | 0.0 | 0.545 |
| BXD08 | -0.35 | 0.15 |
| BXD09 | 0.596 | 0.268 |
| CAST | -0.284 | -0.452 |
| CCcont | 0.898 | 1.059 |
| DS01 | 1.641 | 1.331 |
| DS02 | 1.638 | 0.944 |
| DS04 | -0.115 | 0.554 |
| DS0c | 1.867 | 1.332 |
| GP01 | -0.607 | -0.433 |
| GP02 | -0.353 | 0.159 |
| GP0c | -0.16 | -0.631 |
| NOD | 0.127 | 0.13 |
| NZO | 0.994 | -1.166 |
| PWK | 0.412 | 0.56 |
| H37Rv_KO_CtpC | 0.0 | 2.049 |
| H37Rv_KO_CtpD | 0.0 | 0.39 |
| H37Rv_KO_Rv1272 | -0.084 | 0.979 |
| H37Rv_KO_SugABC | -0.509 | 0.057 |
| H37Rv_KO_MbtN | -0.061 | 0.792 |
| Trans05 | -0.444 | 0.402 |
| macrophage_unactivated | 0.83 | 0.48 |
| IL1 | -0.611 | -0.196 |
| Rapamycin | -0.307 | -0.203 |
| Tcell | 0.59 | -0.326 |
| GMCSF | 0.478 | 0.478 |
| IFNab | 0.0 | 0.877 |
| IFNg | -0.551 | 0.329 |
| IFNg_GMCSF1 | 0.0 | 0.386 |
| Rv1432_day32 | 0.0 | -0.085 |
| Rv1565c_day32 | 0.0 | 0.21 |
| secA2_input | -1.021 | 0.568 |
| delta_Rv3594 | 0.47 | 0.532 |
| delta_Rv3717 | -0.992 | 0.159 |
| delta_Rv3811 | -1.172 | 0.039 |
| delta_Rv0954 | -1.499 | -1.258 |
| PonA1 | -0.286 | -0.335 |
| EccD1_KO | 0.178 | -1.154 |
| EspI_KO | 0.0 | -0.171 |
| PE35_KO | -0.166 | -0.744 |
| PPE68_KO | 0.813 | -0.528 |
| glycerol2 | -1.202 | -1.529 |
| lignocerate | -1.55 | -1.967 |
| oleate | -0.345 | -1.638 |
| phosphatidylcholine | -0.803 | -2.024 |
| acetate | -0.663 | -0.258 |
| glucAc | -1.831 | -0.732 |
| Rv0950ko | 0.172 | -0.859 |
| Rv1096ko | -0.555 | 0.314 |
| Rv3684ko | -0.393 | -0.521 |
| delta_otsA_trehalose | 0.564 | 0.346 |