Top 10 genes with highest correlation to Rv2228c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2973c/recG | (cc=0.4745) | info on Rv2973c/recG |
| Rv1067c/PE_PGRS19 | (cc=0.474) | info on Rv1067c/PE_PGRS19 |
| Rv2401/- | (cc=0.4534) | info on Rv2401/- |
| Rv2976c/ung | (cc=0.4413) | info on Rv2976c/ung |
| Rv2169c/- | (cc=0.4359) | info on Rv2169c/- |
| Rv0003/recF | (cc=0.4274) | info on Rv0003/recF |
| Rv3262/fbiB | (cc=0.425) | info on Rv3262/fbiB |
| Rv0778/cyp126 | (cc=0.4213) | info on Rv0778/cyp126 |
| Rv3674c/nth | (cc=0.4195) | info on Rv3674c/nth |
| Rv2922c/smc | (cc=0.4175) | info on Rv2922c/smc |
Correlation of Rv2228c/- with Rv0003/recF
Normalized LFCs for Rv2228c/-:
(description and provenance of datasets)
| Rv2228c/- | Rv0003/recF | |
| Fe_supp_jason_reseq | 0.268 | 2.382 |
| low_pH_jason_reseq | -1.134 | 0.0 |
| NO_jason_reseq | 0.0 | 0.281 |
| B6_jason_reseq | 1.206 | 0.333 |
| MHCII_jason_reseq | 0.315 | 0.0 |
| Isoniazid02 | -0.49 | 0.063 |
| Rifampicin4 | -0.523 | -1.086 |
| Ethambutol3 | -0.153 | -0.288 |
| Meropenem3 | 0.138 | -0.624 |
| Vancomycin16 | -0.512 | -0.913 |
| Rv2680_day32 | 0.0 | -0.554 |
| H37Rv_KO_MarP | -1.065 | -0.807 |
| hypoxia_3wks | -0.427 | -1.344 |
| hypoxia_6wks | -0.223 | -1.416 |
| glycerol | 2.07 | 1.24 |
| cholesterol | 0.159 | 1.099 |
| AJ | 0.0 | -0.168 |
| Bibs02 | -0.109 | -0.273 |
| Bibs02c | -0.887 | 0.0 |
| BL6 | -0.074 | 0.084 |
| BL6a | -0.377 | 0.696 |
| BXD01 | 0.552 | 0.322 |
| BXD010 | 0.206 | 0.0 |
| BXD011 | -0.335 | 0.383 |
| BXD03 | 0.0 | 0.475 |
| BXD04 | 0.932 | 0.305 |
| BXD05 | -0.256 | 0.176 |
| BXD06 | 0.513 | 0.469 |
| BXD07 | 0.0 | 0.796 |
| BXD08 | -0.35 | 0.174 |
| BXD09 | 0.596 | 0.494 |
| CAST | -0.284 | -0.344 |
| CCcont | 0.898 | 1.531 |
| DS01 | 1.641 | 0.159 |
| DS02 | 1.638 | 0.147 |
| DS04 | -0.115 | 0.37 |
| DS0c | 1.867 | 0.652 |
| GP01 | -0.607 | 0.68 |
| GP02 | -0.353 | -0.06 |
| GP0c | -0.16 | 1.112 |
| NOD | 0.127 | -0.163 |
| NZO | 0.994 | 0.134 |
| PWK | 0.412 | -0.142 |
| H37Rv_KO_CtpC | 0.0 | 0.401 |
| H37Rv_KO_CtpD | 0.0 | 0.778 |
| H37Rv_KO_Rv1272 | -0.084 | 0.185 |
| H37Rv_KO_SugABC | -0.509 | 1.183 |
| H37Rv_KO_MbtN | -0.061 | 0.069 |
| Trans05 | -0.444 | 0.249 |
| macrophage_unactivated | 0.83 | 0.701 |
| IL1 | -0.611 | -0.78 |
| Rapamycin | -0.307 | -0.807 |
| Tcell | 0.59 | -0.267 |
| GMCSF | 0.478 | 0.0 |
| IFNab | 0.0 | 0.877 |
| IFNg | -0.551 | 0.208 |
| IFNg_GMCSF1 | 0.0 | 0.478 |
| Rv1432_day32 | 0.0 | -1.005 |
| Rv1565c_day32 | 0.0 | -0.362 |
| secA2_input | -1.021 | -0.714 |
| delta_Rv3594 | 0.47 | 0.33 |
| delta_Rv3717 | -0.992 | -0.542 |
| delta_Rv3811 | -1.172 | 0.492 |
| delta_Rv0954 | -1.499 | 0.116 |
| PonA1 | -0.286 | -0.426 |
| EccD1_KO | 0.178 | 1.01 |
| EspI_KO | 0.0 | -0.108 |
| PE35_KO | -0.166 | 1.155 |
| PPE68_KO | 0.813 | 1.078 |
| glycerol2 | -1.202 | -2.152 |
| lignocerate | -1.55 | -2.157 |
| oleate | -0.345 | -2.178 |
| phosphatidylcholine | -0.803 | -2.053 |
| acetate | -0.663 | -0.775 |
| glucAc | -1.831 | -0.554 |
| Rv0950ko | 0.172 | 0.0 |
| Rv1096ko | -0.555 | 0.899 |
| Rv3684ko | -0.393 | 0.377 |
| delta_otsA_trehalose | 0.564 | -0.711 |