Top 10 genes with highest correlation to Rv2228c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2973c/recG | (cc=0.4745) | info on Rv2973c/recG |
| Rv1067c/PE_PGRS19 | (cc=0.474) | info on Rv1067c/PE_PGRS19 |
| Rv2401/- | (cc=0.4534) | info on Rv2401/- |
| Rv2976c/ung | (cc=0.4413) | info on Rv2976c/ung |
| Rv2169c/- | (cc=0.4359) | info on Rv2169c/- |
| Rv0003/recF | (cc=0.4274) | info on Rv0003/recF |
| Rv3262/fbiB | (cc=0.425) | info on Rv3262/fbiB |
| Rv0778/cyp126 | (cc=0.4213) | info on Rv0778/cyp126 |
| Rv3674c/nth | (cc=0.4195) | info on Rv3674c/nth |
| Rv2922c/smc | (cc=0.4175) | info on Rv2922c/smc |
Correlation of Rv2228c/- with Rv2401/-
Normalized LFCs for Rv2228c/-:
(description and provenance of datasets)
| Rv2228c/- | Rv2401/- | |
| Fe_supp_jason_reseq | 0.268 | 1.001 |
| low_pH_jason_reseq | -1.134 | 1.261 |
| NO_jason_reseq | 0.0 | 2.079 |
| B6_jason_reseq | 1.206 | 2.108 |
| MHCII_jason_reseq | 0.315 | -2.11 |
| Isoniazid02 | -0.49 | -0.258 |
| Rifampicin4 | -0.523 | -0.742 |
| Ethambutol3 | -0.153 | -0.597 |
| Meropenem3 | 0.138 | -0.588 |
| Vancomycin16 | -0.512 | -0.554 |
| Rv2680_day32 | 0.0 | 0.995 |
| H37Rv_KO_MarP | -1.065 | 0.267 |
| hypoxia_3wks | -0.427 | -0.486 |
| hypoxia_6wks | -0.223 | 2.397 |
| glycerol | 2.07 | 0.341 |
| cholesterol | 0.159 | 0.454 |
| AJ | 0.0 | 0.392 |
| Bibs02 | -0.109 | 0.677 |
| Bibs02c | -0.887 | -0.355 |
| BL6 | -0.074 | -0.723 |
| BL6a | -0.377 | 0.29 |
| BXD01 | 0.552 | -0.347 |
| BXD010 | 0.206 | 0.543 |
| BXD011 | -0.335 | 0.583 |
| BXD03 | 0.0 | -0.229 |
| BXD04 | 0.932 | 0.627 |
| BXD05 | -0.256 | -0.405 |
| BXD06 | 0.513 | 0.068 |
| BXD07 | 0.0 | 1.803 |
| BXD08 | -0.35 | -0.225 |
| BXD09 | 0.596 | 1.39 |
| CAST | -0.284 | 1.952 |
| CCcont | 0.898 | 0.149 |
| DS01 | 1.641 | 2.452 |
| DS02 | 1.638 | 3.341 |
| DS04 | -0.115 | 0.645 |
| DS0c | 1.867 | 2.528 |
| GP01 | -0.607 | -1.012 |
| GP02 | -0.353 | 0.0 |
| GP0c | -0.16 | 0.357 |
| NOD | 0.127 | 0.059 |
| NZO | 0.994 | 0.423 |
| PWK | 0.412 | 1.368 |
| H37Rv_KO_CtpC | 0.0 | 0.082 |
| H37Rv_KO_CtpD | 0.0 | 1.059 |
| H37Rv_KO_Rv1272 | -0.084 | -0.95 |
| H37Rv_KO_SugABC | -0.509 | 0.385 |
| H37Rv_KO_MbtN | -0.061 | -0.921 |
| Trans05 | -0.444 | -1.434 |
| macrophage_unactivated | 0.83 | -1.228 |
| IL1 | -0.611 | 0.077 |
| Rapamycin | -0.307 | 0.236 |
| Tcell | 0.59 | 0.857 |
| GMCSF | 0.478 | -0.85 |
| IFNab | 0.0 | -0.417 |
| IFNg | -0.551 | 0.644 |
| IFNg_GMCSF1 | 0.0 | -3.224 |
| Rv1432_day32 | 0.0 | 1.352 |
| Rv1565c_day32 | 0.0 | 0.736 |
| secA2_input | -1.021 | 0.099 |
| delta_Rv3594 | 0.47 | -1.479 |
| delta_Rv3717 | -0.992 | -2.246 |
| delta_Rv3811 | -1.172 | -1.862 |
| delta_Rv0954 | -1.499 | -2.076 |
| PonA1 | -0.286 | -0.091 |
| EccD1_KO | 0.178 | 0.901 |
| EspI_KO | 0.0 | -0.097 |
| PE35_KO | -0.166 | 2.818 |
| PPE68_KO | 0.813 | 2.048 |
| glycerol2 | -1.202 | -2.474 |
| lignocerate | -1.55 | -1.689 |
| oleate | -0.345 | -2.504 |
| phosphatidylcholine | -0.803 | -2.473 |
| acetate | -0.663 | -0.465 |
| glucAc | -1.831 | -0.187 |
| Rv0950ko | 0.172 | -1.517 |
| Rv1096ko | -0.555 | -1.034 |
| Rv3684ko | -0.393 | -3.331 |
| delta_otsA_trehalose | 0.564 | -0.864 |