Top 10 genes with highest correlation to Rv2143/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3312c/- | (cc=0.5057) | info on Rv3312c/- |
| Rv2345/- | (cc=0.505) | info on Rv2345/- |
| Rv0342/iniA | (cc=0.4819) | info on Rv0342/iniA |
| Rv3109/moaA1 | (cc=0.4807) | info on Rv3109/moaA1 |
| Rv1997/ctpF | (cc=0.4637) | info on Rv1997/ctpF |
| Rv2313c/- | (cc=0.4537) | info on Rv2313c/- |
| Rv0754/PE_PGRS11 | (cc=0.4503) | info on Rv0754/PE_PGRS11 |
| Rv1882c/- | (cc=0.45) | info on Rv1882c/- |
| Rv2679/echA15 | (cc=0.444) | info on Rv2679/echA15 |
| Rv0830/- | (cc=0.4388) | info on Rv0830/- |
Correlation of Rv2143/- with Rv1997/ctpF
Normalized LFCs for Rv2143/-:
(description and provenance of datasets)
| Rv2143/- | Rv1997/ctpF | |
| Fe_supp_jason_reseq | -0.313 | -0.878 |
| low_pH_jason_reseq | -1.011 | -0.186 |
| NO_jason_reseq | 0.087 | -0.095 |
| B6_jason_reseq | 0.05 | 0.162 |
| MHCII_jason_reseq | 0.391 | 0.632 |
| Isoniazid02 | -1.005 | -2.354 |
| Rifampicin4 | 1.088 | 0.523 |
| Ethambutol3 | -0.967 | -1.859 |
| Meropenem3 | -0.571 | -1.853 |
| Vancomycin16 | -0.493 | -0.881 |
| Rv2680_day32 | -0.412 | -0.306 |
| H37Rv_KO_MarP | -0.238 | -0.102 |
| hypoxia_3wks | 0.79 | 0.152 |
| hypoxia_6wks | 0.589 | 0.209 |
| glycerol | -0.392 | 0.041 |
| cholesterol | 0.062 | -0.328 |
| AJ | 0.476 | -0.129 |
| Bibs02 | -0.056 | 0.629 |
| Bibs02c | -0.623 | 0.494 |
| BL6 | -0.092 | -0.134 |
| BL6a | -0.412 | -0.257 |
| BXD01 | -0.186 | -0.242 |
| BXD010 | -0.791 | -0.367 |
| BXD011 | -0.21 | -0.791 |
| BXD03 | -0.764 | -0.824 |
| BXD04 | -0.476 | -1.454 |
| BXD05 | -0.386 | -0.82 |
| BXD06 | -0.452 | -1.041 |
| BXD07 | -0.315 | -1.1 |
| BXD08 | -0.317 | -0.81 |
| BXD09 | -0.273 | -0.908 |
| CAST | -0.063 | 0.322 |
| CCcont | -0.586 | -0.77 |
| DS01 | -0.222 | 0.258 |
| DS02 | -0.518 | 0.238 |
| DS04 | -0.218 | 0.212 |
| DS0c | -0.622 | 0.404 |
| GP01 | -0.396 | -0.554 |
| GP02 | 0.207 | 0.022 |
| GP0c | -0.392 | -0.149 |
| NOD | 0.535 | 0.542 |
| NZO | 0.633 | -0.37 |
| PWK | 0.298 | -0.301 |
| H37Rv_KO_CtpC | 0.232 | 0.033 |
| H37Rv_KO_CtpD | -0.373 | 0.313 |
| H37Rv_KO_Rv1272 | 0.728 | 0.254 |
| H37Rv_KO_SugABC | 0.223 | 0.718 |
| H37Rv_KO_MbtN | 0.006 | -0.242 |
| Trans05 | 0.309 | 0.391 |
| macrophage_unactivated | -0.044 | -0.303 |
| IL1 | 0.19 | -0.486 |
| Rapamycin | 0.276 | -0.095 |
| Tcell | 0.091 | -0.313 |
| GMCSF | 0.385 | 0.04 |
| IFNab | -0.085 | -0.444 |
| IFNg | 0.037 | -0.58 |
| IFNg_GMCSF1 | 0.311 | -0.198 |
| Rv1432_day32 | 0.795 | 0.021 |
| Rv1565c_day32 | 0.396 | -0.235 |
| secA2_input | -0.531 | 0.834 |
| delta_Rv3594 | -0.011 | -0.154 |
| delta_Rv3717 | 0.123 | -0.235 |
| delta_Rv3811 | -0.457 | -0.329 |
| delta_Rv0954 | -0.074 | -0.376 |
| PonA1 | -1.13 | -1.025 |
| EccD1_KO | 0.257 | 0.352 |
| EspI_KO | -0.011 | 0.04 |
| PE35_KO | -0.79 | 0.35 |
| PPE68_KO | -0.806 | 0.218 |
| glycerol2 | 0.188 | 0.223 |
| lignocerate | 0.265 | -0.029 |
| oleate | 0.644 | 0.457 |
| phosphatidylcholine | 0.455 | 0.283 |
| acetate | -0.224 | -0.062 |
| glucAc | -0.308 | 0.085 |
| Rv0950ko | 0.103 | -0.359 |
| Rv1096ko | -0.841 | -0.6 |
| Rv3684ko | -0.337 | 0.138 |
| delta_otsA_trehalose | 1.355 | 0.064 |