Top 10 genes with highest correlation to Rv2078/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0596c/vapB4 | (cc=0.5711) | info on Rv0596c/vapB4 |
| Rv1471/trxB1 | (cc=0.569) | info on Rv1471/trxB1 |
| Rv3819/- | (cc=0.5624) | info on Rv3819/- |
| Rv1366/- | (cc=0.5622) | info on Rv1366/- |
| Rv2253/- | (cc=0.5485) | info on Rv2253/- |
| Rv3780/- | (cc=0.5428) | info on Rv3780/- |
| Rv3243c/- | (cc=0.534) | info on Rv3243c/- |
| Rv2077A/- | (cc=0.5327) | info on Rv2077A/- |
| Rv0207c/- | (cc=0.5269) | info on Rv0207c/- |
| Rv3112/moaD1 | (cc=0.5265) | info on Rv3112/moaD1 |
Correlation of Rv2078/- with Rv3780/-
Normalized LFCs for Rv2078/-:
(description and provenance of datasets)
| Rv2078/- | Rv3780/- | |
| Fe_supp_jason_reseq | -1.478 | 0.0 |
| low_pH_jason_reseq | 1.154 | 0.0 |
| NO_jason_reseq | -3.715 | 0.0 |
| B6_jason_reseq | -1.004 | 0.0 |
| MHCII_jason_reseq | -1.831 | 0.0 |
| Isoniazid02 | 0.648 | -0.383 |
| Rifampicin4 | 0.211 | -0.341 |
| Ethambutol3 | -0.505 | -0.153 |
| Meropenem3 | -0.701 | -0.315 |
| Vancomycin16 | 0.499 | -0.698 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | 1.411 | 1.936 |
| hypoxia_3wks | -1.655 | -1.049 |
| hypoxia_6wks | 2.629 | -0.549 |
| glycerol | -2.499 | -0.202 |
| cholesterol | -2.008 | 0.659 |
| AJ | -0.316 | -0.232 |
| Bibs02 | 1.325 | -0.183 |
| Bibs02c | -0.674 | 0.527 |
| BL6 | 0.307 | 0.569 |
| BL6a | 0.042 | 0.346 |
| BXD01 | 2.42 | 0.0 |
| BXD010 | 0.379 | 0.0 |
| BXD011 | 1.575 | 0.727 |
| BXD03 | 0.189 | -0.135 |
| BXD04 | -0.472 | 0.0 |
| BXD05 | -0.151 | 0.0 |
| BXD06 | 2.187 | 0.0 |
| BXD07 | 0.673 | 0.0 |
| BXD08 | 0.782 | 0.521 |
| BXD09 | 1.71 | 0.128 |
| CAST | 0.752 | -0.23 |
| CCcont | 1.474 | 1.934 |
| DS01 | 0.286 | -0.236 |
| DS02 | -0.296 | -0.217 |
| DS04 | 0.89 | 0.0 |
| DS0c | 0.343 | 1.354 |
| GP01 | -1.64 | 0.0 |
| GP02 | -1.382 | -0.083 |
| GP0c | -2.16 | 0.0 |
| NOD | 1.347 | -0.225 |
| NZO | -0.043 | -0.199 |
| PWK | 1.712 | 0.342 |
| H37Rv_KO_CtpC | 2.69 | 1.759 |
| H37Rv_KO_CtpD | -2.104 | 0.221 |
| H37Rv_KO_Rv1272 | 2.043 | 0.553 |
| H37Rv_KO_SugABC | 2.4 | 0.0 |
| H37Rv_KO_MbtN | 0.369 | 0.18 |
| Trans05 | 1.844 | 0.0 |
| macrophage_unactivated | 0.969 | 0.83 |
| IL1 | -1.157 | 0.0 |
| Rapamycin | -0.902 | 0.0 |
| Tcell | 2.805 | 0.0 |
| GMCSF | -1.912 | 0.0 |
| IFNab | -1.826 | 0.0 |
| IFNg | -1.462 | 0.369 |
| IFNg_GMCSF1 | -3.026 | 0.0 |
| Rv1432_day32 | -0.583 | 0.052 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | 2.129 | -0.568 |
| delta_Rv3594 | 0.069 | 0.281 |
| delta_Rv3717 | 1.576 | 0.232 |
| delta_Rv3811 | -2.357 | -0.315 |
| delta_Rv0954 | -1.096 | -0.981 |
| PonA1 | -0.56 | -0.53 |
| EccD1_KO | -0.148 | -0.921 |
| EspI_KO | -1.246 | -0.799 |
| PE35_KO | 1.275 | -0.254 |
| PPE68_KO | 1.238 | 1.59 |
| glycerol2 | 4.047 | 1.684 |
| lignocerate | 4.212 | 2.097 |
| oleate | 0.0 | 0.0 |
| phosphatidylcholine | 3.961 | 1.499 |
| acetate | 5.772 | 3.004 |
| glucAc | 4.399 | 2.859 |
| Rv0950ko | -0.742 | 0.621 |
| Rv1096ko | -0.401 | 0.323 |
| Rv3684ko | -0.141 | -0.377 |
| delta_otsA_trehalose | -1.452 | -3.775 |