Top 10 genes with highest correlation to Rv2078/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0596c/vapB4 | (cc=0.5711) | info on Rv0596c/vapB4 |
| Rv1471/trxB1 | (cc=0.569) | info on Rv1471/trxB1 |
| Rv3819/- | (cc=0.5624) | info on Rv3819/- |
| Rv1366/- | (cc=0.5622) | info on Rv1366/- |
| Rv2253/- | (cc=0.5485) | info on Rv2253/- |
| Rv3780/- | (cc=0.5428) | info on Rv3780/- |
| Rv3243c/- | (cc=0.534) | info on Rv3243c/- |
| Rv2077A/- | (cc=0.5327) | info on Rv2077A/- |
| Rv0207c/- | (cc=0.5269) | info on Rv0207c/- |
| Rv3112/moaD1 | (cc=0.5265) | info on Rv3112/moaD1 |
Correlation of Rv2078/- with Rv3243c/-
Normalized LFCs for Rv2078/-:
(description and provenance of datasets)
| Rv2078/- | Rv3243c/- | |
| Fe_supp_jason_reseq | -1.478 | 0.265 |
| low_pH_jason_reseq | 1.154 | 2.416 |
| NO_jason_reseq | -3.715 | -0.777 |
| B6_jason_reseq | -1.004 | 0.186 |
| MHCII_jason_reseq | -1.831 | -1.249 |
| Isoniazid02 | 0.648 | 0.089 |
| Rifampicin4 | 0.211 | 1.289 |
| Ethambutol3 | -0.505 | 0.281 |
| Meropenem3 | -0.701 | 0.277 |
| Vancomycin16 | 0.499 | 0.753 |
| Rv2680_day32 | 0.0 | 0.131 |
| H37Rv_KO_MarP | 1.411 | 0.881 |
| hypoxia_3wks | -1.655 | -0.542 |
| hypoxia_6wks | 2.629 | -2.088 |
| glycerol | -2.499 | 1.217 |
| cholesterol | -2.008 | 0.639 |
| AJ | -0.316 | -0.711 |
| Bibs02 | 1.325 | 0.89 |
| Bibs02c | -0.674 | -0.544 |
| BL6 | 0.307 | 0.507 |
| BL6a | 0.042 | 0.804 |
| BXD01 | 2.42 | 1.137 |
| BXD010 | 0.379 | 0.679 |
| BXD011 | 1.575 | 0.149 |
| BXD03 | 0.189 | -1.758 |
| BXD04 | -0.472 | 0.221 |
| BXD05 | -0.151 | 0.699 |
| BXD06 | 2.187 | 0.693 |
| BXD07 | 0.673 | 0.734 |
| BXD08 | 0.782 | -0.024 |
| BXD09 | 1.71 | 1.042 |
| CAST | 0.752 | -0.214 |
| CCcont | 1.474 | 1.337 |
| DS01 | 0.286 | 0.041 |
| DS02 | -0.296 | -0.772 |
| DS04 | 0.89 | 1.05 |
| DS0c | 0.343 | -0.77 |
| GP01 | -1.64 | -1.832 |
| GP02 | -1.382 | -1.251 |
| GP0c | -2.16 | -2.282 |
| NOD | 1.347 | -0.913 |
| NZO | -0.043 | -0.224 |
| PWK | 1.712 | 0.102 |
| H37Rv_KO_CtpC | 2.69 | -1.599 |
| H37Rv_KO_CtpD | -2.104 | -1.572 |
| H37Rv_KO_Rv1272 | 2.043 | -1.522 |
| H37Rv_KO_SugABC | 2.4 | -0.634 |
| H37Rv_KO_MbtN | 0.369 | -1.221 |
| Trans05 | 1.844 | 0.761 |
| macrophage_unactivated | 0.969 | -1.004 |
| IL1 | -1.157 | -1.631 |
| Rapamycin | -0.902 | 0.574 |
| Tcell | 2.805 | -0.593 |
| GMCSF | -1.912 | -2.915 |
| IFNab | -1.826 | 0.49 |
| IFNg | -1.462 | 0.567 |
| IFNg_GMCSF1 | -3.026 | -1.596 |
| Rv1432_day32 | -0.583 | -0.057 |
| Rv1565c_day32 | 0.0 | -2.578 |
| secA2_input | 2.129 | -0.662 |
| delta_Rv3594 | 0.069 | -0.662 |
| delta_Rv3717 | 1.576 | -1.353 |
| delta_Rv3811 | -2.357 | -3.637 |
| delta_Rv0954 | -1.096 | -0.266 |
| PonA1 | -0.56 | -1.916 |
| EccD1_KO | -0.148 | 2.358 |
| EspI_KO | -1.246 | 0.761 |
| PE35_KO | 1.275 | 0.534 |
| PPE68_KO | 1.238 | -0.16 |
| glycerol2 | 4.047 | 4.126 |
| lignocerate | 4.212 | 4.86 |
| oleate | 0.0 | 0.196 |
| phosphatidylcholine | 3.961 | 3.989 |
| acetate | 5.772 | 5.617 |
| glucAc | 4.399 | 4.009 |
| Rv0950ko | -0.742 | 1.815 |
| Rv1096ko | -0.401 | 0.971 |
| Rv3684ko | -0.141 | -0.93 |
| delta_otsA_trehalose | -1.452 | 1.715 |