Top 10 genes with highest correlation to Rv2078/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0596c/vapB4 | (cc=0.5711) | info on Rv0596c/vapB4 |
| Rv1471/trxB1 | (cc=0.569) | info on Rv1471/trxB1 |
| Rv3819/- | (cc=0.5624) | info on Rv3819/- |
| Rv1366/- | (cc=0.5622) | info on Rv1366/- |
| Rv2253/- | (cc=0.5485) | info on Rv2253/- |
| Rv3780/- | (cc=0.5428) | info on Rv3780/- |
| Rv3243c/- | (cc=0.534) | info on Rv3243c/- |
| Rv2077A/- | (cc=0.5327) | info on Rv2077A/- |
| Rv0207c/- | (cc=0.5269) | info on Rv0207c/- |
| Rv3112/moaD1 | (cc=0.5265) | info on Rv3112/moaD1 |
Correlation of Rv2078/- with Rv2077A/-
Normalized LFCs for Rv2078/-:
(description and provenance of datasets)
| Rv2078/- | Rv2077A/- | |
| Fe_supp_jason_reseq | -1.478 | 0.726 |
| low_pH_jason_reseq | 1.154 | -0.731 |
| NO_jason_reseq | -3.715 | 0.302 |
| B6_jason_reseq | -1.004 | 0.605 |
| MHCII_jason_reseq | -1.831 | -0.083 |
| Isoniazid02 | 0.648 | 0.519 |
| Rifampicin4 | 0.211 | 1.175 |
| Ethambutol3 | -0.505 | 0.283 |
| Meropenem3 | -0.701 | 2.531 |
| Vancomycin16 | 0.499 | 0.921 |
| Rv2680_day32 | 0.0 | -0.608 |
| H37Rv_KO_MarP | 1.411 | -0.825 |
| hypoxia_3wks | -1.655 | -0.072 |
| hypoxia_6wks | 2.629 | 0.681 |
| glycerol | -2.499 | -0.806 |
| cholesterol | -2.008 | -0.203 |
| AJ | -0.316 | 0.306 |
| Bibs02 | 1.325 | 1.582 |
| Bibs02c | -0.674 | -1.131 |
| BL6 | 0.307 | 0.097 |
| BL6a | 0.042 | -0.165 |
| BXD01 | 2.42 | 0.304 |
| BXD010 | 0.379 | 0.681 |
| BXD011 | 1.575 | 0.598 |
| BXD03 | 0.189 | -0.158 |
| BXD04 | -0.472 | 0.939 |
| BXD05 | -0.151 | -0.235 |
| BXD06 | 2.187 | -0.233 |
| BXD07 | 0.673 | 0.183 |
| BXD08 | 0.782 | 0.373 |
| BXD09 | 1.71 | 0.014 |
| CAST | 0.752 | 0.424 |
| CCcont | 1.474 | 0.672 |
| DS01 | 0.286 | -0.25 |
| DS02 | -0.296 | -0.9 |
| DS04 | 0.89 | 0.422 |
| DS0c | 0.343 | 0.248 |
| GP01 | -1.64 | -0.469 |
| GP02 | -1.382 | -1.351 |
| GP0c | -2.16 | -1.232 |
| NOD | 1.347 | 0.981 |
| NZO | -0.043 | 0.35 |
| PWK | 1.712 | 0.737 |
| H37Rv_KO_CtpC | 2.69 | 0.804 |
| H37Rv_KO_CtpD | -2.104 | -0.642 |
| H37Rv_KO_Rv1272 | 2.043 | -0.058 |
| H37Rv_KO_SugABC | 2.4 | -1.562 |
| H37Rv_KO_MbtN | 0.369 | 0.591 |
| Trans05 | 1.844 | 1.343 |
| macrophage_unactivated | 0.969 | 2.216 |
| IL1 | -1.157 | -0.828 |
| Rapamycin | -0.902 | -1.7 |
| Tcell | 2.805 | 0.935 |
| GMCSF | -1.912 | -0.586 |
| IFNab | -1.826 | -0.671 |
| IFNg | -1.462 | -0.85 |
| IFNg_GMCSF1 | -3.026 | -1.32 |
| Rv1432_day32 | -0.583 | -0.365 |
| Rv1565c_day32 | 0.0 | -0.193 |
| secA2_input | 2.129 | 1.224 |
| delta_Rv3594 | 0.069 | 0.034 |
| delta_Rv3717 | 1.576 | 0.315 |
| delta_Rv3811 | -2.357 | 0.665 |
| delta_Rv0954 | -1.096 | 0.028 |
| PonA1 | -0.56 | -0.025 |
| EccD1_KO | -0.148 | 0.645 |
| EspI_KO | -1.246 | 0.225 |
| PE35_KO | 1.275 | 0.099 |
| PPE68_KO | 1.238 | -0.112 |
| glycerol2 | 4.047 | 1.62 |
| lignocerate | 4.212 | 1.939 |
| oleate | 0.0 | -0.282 |
| phosphatidylcholine | 3.961 | 1.745 |
| acetate | 5.772 | 1.983 |
| glucAc | 4.399 | 2.2 |
| Rv0950ko | -0.742 | 0.54 |
| Rv1096ko | -0.401 | 1.327 |
| Rv3684ko | -0.141 | 0.036 |
| delta_otsA_trehalose | -1.452 | 0.281 |