Top 10 genes with highest correlation to Rv2078/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0596c/vapB4 | (cc=0.5711) | info on Rv0596c/vapB4 |
| Rv1471/trxB1 | (cc=0.569) | info on Rv1471/trxB1 |
| Rv3819/- | (cc=0.5624) | info on Rv3819/- |
| Rv1366/- | (cc=0.5622) | info on Rv1366/- |
| Rv2253/- | (cc=0.5485) | info on Rv2253/- |
| Rv3780/- | (cc=0.5428) | info on Rv3780/- |
| Rv3243c/- | (cc=0.534) | info on Rv3243c/- |
| Rv2077A/- | (cc=0.5327) | info on Rv2077A/- |
| Rv0207c/- | (cc=0.5269) | info on Rv0207c/- |
| Rv3112/moaD1 | (cc=0.5265) | info on Rv3112/moaD1 |
Correlation of Rv2078/- with Rv0596c/vapB4
Normalized LFCs for Rv2078/-:
(description and provenance of datasets)
| Rv2078/- | Rv0596c/vapB4 | |
| Fe_supp_jason_reseq | -1.478 | 1.514 |
| low_pH_jason_reseq | 1.154 | 2.212 |
| NO_jason_reseq | -3.715 | 0.929 |
| B6_jason_reseq | -1.004 | -0.941 |
| MHCII_jason_reseq | -1.831 | -0.694 |
| Isoniazid02 | 0.648 | -0.422 |
| Rifampicin4 | 0.211 | -0.642 |
| Ethambutol3 | -0.505 | -0.418 |
| Meropenem3 | -0.701 | -0.701 |
| Vancomycin16 | 0.499 | -0.058 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | 1.411 | -1.892 |
| hypoxia_3wks | -1.655 | -0.383 |
| hypoxia_6wks | 2.629 | -0.647 |
| glycerol | -2.499 | 0.0 |
| cholesterol | -2.008 | 0.614 |
| AJ | -0.316 | 0.0 |
| Bibs02 | 1.325 | 0.0 |
| Bibs02c | -0.674 | 0.0 |
| BL6 | 0.307 | 1.56 |
| BL6a | 0.042 | 1.812 |
| BXD01 | 2.42 | 3.134 |
| BXD010 | 0.379 | 0.543 |
| BXD011 | 1.575 | 5.511 |
| BXD03 | 0.189 | 0.573 |
| BXD04 | -0.472 | 2.0 |
| BXD05 | -0.151 | 0.975 |
| BXD06 | 2.187 | 3.62 |
| BXD07 | 0.673 | 2.042 |
| BXD08 | 0.782 | 3.186 |
| BXD09 | 1.71 | 2.073 |
| CAST | 0.752 | 0.0 |
| CCcont | 1.474 | 3.48 |
| DS01 | 0.286 | 0.0 |
| DS02 | -0.296 | 0.0 |
| DS04 | 0.89 | 0.194 |
| DS0c | 0.343 | 0.919 |
| GP01 | -1.64 | 1.35 |
| GP02 | -1.382 | 0.159 |
| GP0c | -2.16 | 1.132 |
| NOD | 1.347 | 0.0 |
| NZO | -0.043 | 0.0 |
| PWK | 1.712 | 0.0 |
| H37Rv_KO_CtpC | 2.69 | 0.998 |
| H37Rv_KO_CtpD | -2.104 | 0.0 |
| H37Rv_KO_Rv1272 | 2.043 | 1.022 |
| H37Rv_KO_SugABC | 2.4 | 0.099 |
| H37Rv_KO_MbtN | 0.369 | 1.546 |
| Trans05 | 1.844 | 1.672 |
| macrophage_unactivated | 0.969 | 0.83 |
| IL1 | -1.157 | 0.122 |
| Rapamycin | -0.902 | 0.307 |
| Tcell | 2.805 | 1.678 |
| GMCSF | -1.912 | -0.919 |
| IFNab | -1.826 | -0.323 |
| IFNg | -1.462 | -0.791 |
| IFNg_GMCSF1 | -3.026 | -1.26 |
| Rv1432_day32 | -0.583 | 0.0 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | 2.129 | 1.608 |
| delta_Rv3594 | 0.069 | -1.15 |
| delta_Rv3717 | 1.576 | -0.853 |
| delta_Rv3811 | -2.357 | -1.933 |
| delta_Rv0954 | -1.096 | -0.615 |
| PonA1 | -0.56 | 0.452 |
| EccD1_KO | -0.148 | 0.0 |
| EspI_KO | -1.246 | -0.2 |
| PE35_KO | 1.275 | 1.21 |
| PPE68_KO | 1.238 | 1.648 |
| glycerol2 | 4.047 | 2.9 |
| lignocerate | 4.212 | 3.058 |
| oleate | 0.0 | 0.0 |
| phosphatidylcholine | 3.961 | 2.644 |
| acetate | 5.772 | 3.955 |
| glucAc | 4.399 | 3.101 |
| Rv0950ko | -0.742 | -1.764 |
| Rv1096ko | -0.401 | -0.335 |
| Rv3684ko | -0.141 | 0.652 |
| delta_otsA_trehalose | -1.452 | 0.254 |