TnSeqCorr

Top 10 genes with highest correlation to Rv2063A/mazF7:

update plotcorrelationlink to info on gene
Rv1843c/guaB1 (cc=0.6178) info on Rv1843c/guaB1
Rv0846c/- (cc=0.5895) info on Rv0846c/-
Rv2636/- (cc=0.5764) info on Rv2636/-
Rv3367/PE_PGRS51 (cc=0.5739) info on Rv3367/PE_PGRS51
Rv3401/- (cc=0.562) info on Rv3401/-
Rv1815/- (cc=0.5496) info on Rv1815/-
Rv1834/lipZ (cc=0.5484) info on Rv1834/lipZ
Rv3532/PPE61 (cc=0.5374) info on Rv3532/PPE61
Rv2687c/- (cc=0.5313) info on Rv2687c/-
Rv2340c/PE_PGRS39 (cc=0.5297) info on Rv2340c/PE_PGRS39

Correlation of Rv2063A/mazF7 with Rv3532/PPE61

Normalized LFCs for Rv2063A/mazF7:
(description and provenance of datasets)
Rv2063A/mazF7Rv3532/PPE61
Fe_supp_jason_reseq

-0.63

-0.058

low_pH_jason_reseq

-1.272

-0.79

NO_jason_reseq

0.706

-0.194

B6_jason_reseq

1.121

0.706

MHCII_jason_reseq

1.353

0.622

Isoniazid02

1.021

0.501

Rifampicin4

0.181

0.019

Ethambutol3

0.586

0.798

Meropenem3

0.763

0.187

Vancomycin16

0.743

0.204

Rv2680_day32

0.594

-0.116

H37Rv_KO_MarP

0.323

0.203

hypoxia_3wks

0.443

0.096

hypoxia_6wks

-0.148

-0.129

glycerol

-0.031

0.334

cholesterol

0.237

0.284

AJ

0.869

0.05

Bibs02

0.736

0.313

Bibs02c

0.897

0.371

BL6

0.072

0.12

BL6a

0.023

-0.014

BXD01

-1.052

-0.209

BXD010

-1.219

-0.409

BXD011

-1.222

0.005

BXD03

-0.161

0.054

BXD04

-2.091

-0.004

BXD05

-0.061

0.371

BXD06

-1.529

-0.348

BXD07

-1.083

-0.241

BXD08

-0.626

-0.537

BXD09

-1.238

-0.257

CAST

0.647

0.452

CCcont

-1.346

-0.011

DS01

0.37

0.435

DS02

0.227

0.317

DS04

-0.441

0.357

DS0c

-0.085

0.731

GP01

-1.251

0.479

GP02

0.488

0.504

GP0c

-0.325

-0.254

NOD

-0.172

0.049

NZO

0.029

0.238

PWK

0.226

0.267

H37Rv_KO_CtpC

-0.772

0.344

H37Rv_KO_CtpD

0.756

0.176

H37Rv_KO_Rv1272

-1.001

0.169

H37Rv_KO_SugABC

-0.395

0.239

H37Rv_KO_MbtN

0.0

-0.361

Trans05

0.319

-0.31

macrophage_unactivated

-2.03

-0.417

IL1

-0.991

-0.427

Rapamycin

-0.758

-0.282

Tcell

-1.3

-0.156

GMCSF

-0.055

-0.259

IFNab

-0.747

0.203

IFNg

-1.245

-0.086

IFNg_GMCSF1

-1.684

0.132

Rv1432_day32

2.451

1.514

Rv1565c_day32

0.389

0.286

secA2_input

0.244

-0.291

delta_Rv3594

-1.187

-0.427

delta_Rv3717

0.122

-0.205

delta_Rv3811

-0.877

-0.346

delta_Rv0954

-0.359

-0.275

PonA1

0.259

-0.441

EccD1_KO

0.536

-0.145

EspI_KO

0.371

-0.465

PE35_KO

0.018

-0.23

PPE68_KO

-0.921

-0.221

glycerol2

-0.597

0.907

lignocerate

0.039

0.6

oleate

0.189

0.818

phosphatidylcholine

0.176

0.605

acetate

0.183

0.038

glucAc

0.312

0.0

Rv0950ko

0.066

0.317

Rv1096ko

-0.296

0.015

Rv3684ko

-2.974

-0.046

delta_otsA_trehalose

1.896

1.375