Top 10 genes with highest correlation to Rv2034/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0628c/- | (cc=0.4255) | info on Rv0628c/- |
| Rv1457c/- | (cc=0.4236) | info on Rv1457c/- |
| Rv2965c/kdtB | (cc=0.4164) | info on Rv2965c/kdtB |
| Rv3456c/rplQ | (cc=0.4074) | info on Rv3456c/rplQ |
| Rv0651/rplJ | (cc=0.4066) | info on Rv0651/rplJ |
| Rv0812/- | (cc=0.3873) | info on Rv0812/- |
| Rv2609c/- | (cc=0.3773) | info on Rv2609c/- |
| Rv0681/- | (cc=0.3751) | info on Rv0681/- |
| Rv1636/TB15.3 | (cc=0.371) | info on Rv1636/TB15.3 |
| Rv0791c/- | (cc=0.3666) | info on Rv0791c/- |
Correlation of Rv2034/- with Rv0628c/-
Normalized LFCs for Rv2034/-:
(description and provenance of datasets)
| Rv2034/- | Rv0628c/- | |
| Fe_supp_jason_reseq | 0.38 | -1.418 |
| low_pH_jason_reseq | -0.925 | -1.128 |
| NO_jason_reseq | 1.536 | 0.845 |
| B6_jason_reseq | -0.723 | -0.181 |
| MHCII_jason_reseq | -1.112 | -0.579 |
| Isoniazid02 | 0.311 | 0.503 |
| Rifampicin4 | 1.424 | 0.474 |
| Ethambutol3 | -0.146 | 0.045 |
| Meropenem3 | 0.426 | 0.483 |
| Vancomycin16 | 0.0 | 0.098 |
| Rv2680_day32 | 0.0 | 1.237 |
| H37Rv_KO_MarP | 3.236 | 0.319 |
| hypoxia_3wks | -0.195 | 0.159 |
| hypoxia_6wks | -0.933 | 0.01 |
| glycerol | -0.976 | -0.462 |
| cholesterol | -1.504 | 1.184 |
| AJ | -1.593 | 0.076 |
| Bibs02 | 0.751 | 0.38 |
| Bibs02c | -2.172 | -0.07 |
| BL6 | 0.725 | 0.07 |
| BL6a | 0.0 | -0.344 |
| BXD01 | -0.8 | -0.431 |
| BXD010 | -1.329 | -1.06 |
| BXD011 | -0.272 | -0.415 |
| BXD03 | 1.5 | -0.904 |
| BXD04 | -0.048 | -0.095 |
| BXD05 | 1.87 | 0.312 |
| BXD06 | 0.05 | -0.151 |
| BXD07 | -1.174 | 0.365 |
| BXD08 | 0.236 | 0.179 |
| BXD09 | 0.422 | -0.642 |
| CAST | 0.0 | 0.479 |
| CCcont | 1.193 | 0.113 |
| DS01 | 1.571 | 0.741 |
| DS02 | 0.893 | 0.849 |
| DS04 | 2.753 | 1.952 |
| DS0c | -0.174 | 0.105 |
| GP01 | -1.025 | -0.458 |
| GP02 | -0.864 | -1.061 |
| GP0c | -1.35 | -0.233 |
| NOD | 0.399 | -0.633 |
| NZO | -1.691 | -0.874 |
| PWK | -0.948 | 0.016 |
| H37Rv_KO_CtpC | 0.625 | -0.753 |
| H37Rv_KO_CtpD | 0.452 | -0.637 |
| H37Rv_KO_Rv1272 | -1.464 | -0.219 |
| H37Rv_KO_SugABC | -0.756 | -1.277 |
| H37Rv_KO_MbtN | -0.967 | -0.546 |
| Trans05 | 1.282 | -0.532 |
| macrophage_unactivated | -1.398 | 0.859 |
| IL1 | 1.13 | 1.092 |
| Rapamycin | 2.296 | 1.08 |
| Tcell | 0.661 | 0.388 |
| GMCSF | 0.776 | 1.354 |
| IFNab | 2.5 | 0.39 |
| IFNg | 0.604 | -0.214 |
| IFNg_GMCSF1 | -1.163 | -0.116 |
| Rv1432_day32 | 0.0 | 0.587 |
| Rv1565c_day32 | 0.0 | 1.205 |
| secA2_input | 5.28 | 1.223 |
| delta_Rv3594 | 2.885 | 0.828 |
| delta_Rv3717 | 2.146 | 0.54 |
| delta_Rv3811 | 1.392 | 2.085 |
| delta_Rv0954 | -0.357 | 1.246 |
| PonA1 | -0.233 | 1.503 |
| EccD1_KO | 2.773 | 0.089 |
| EspI_KO | 0.0 | 0.02 |
| PE35_KO | -2.234 | -1.485 |
| PPE68_KO | -0.426 | -0.531 |
| glycerol2 | 0.0 | 0.0 |
| lignocerate | 1.128 | 0.429 |
| oleate | 0.0 | -0.121 |
| phosphatidylcholine | 0.193 | 0.594 |
| acetate | 1.998 | -0.171 |
| glucAc | 1.638 | -0.243 |
| Rv0950ko | 1.276 | 0.069 |
| Rv1096ko | 1.342 | -0.069 |
| Rv3684ko | -1.261 | -0.671 |
| delta_otsA_trehalose | 0.0 | -0.925 |