TnSeqCorr

Top 10 genes with highest correlation to Rv2030c/-:

update plotcorrelationlink to info on gene
Rv2031c/hspX (cc=0.821) info on Rv2031c/hspX
Rv1070c/echA8 (cc=0.6076) info on Rv1070c/echA8
Rv0344c/lpqJ (cc=0.6014) info on Rv0344c/lpqJ
Rv1735c/- (cc=0.5788) info on Rv1735c/-
Rv2006/otsB1 (cc=0.5779) info on Rv2006/otsB1
Rv1182/papA3 (cc=0.5774) info on Rv1182/papA3
Rv0089/- (cc=0.5762) info on Rv0089/-
Rv3607c/folB (cc=0.5635) info on Rv3607c/folB
Rv1894c/- (cc=0.5563) info on Rv1894c/-
Rv2490c/PE_PGRS43 (cc=0.5562) info on Rv2490c/PE_PGRS43

Correlation of Rv2030c/- with Rv1735c/-

Normalized LFCs for Rv2030c/-:
(description and provenance of datasets)
Rv2030c/-Rv1735c/-
Fe_supp_jason_reseq

-1.103

-1.307

low_pH_jason_reseq

0.132

-0.656

NO_jason_reseq

0.664

0.118

B6_jason_reseq

-0.389

-1.084

MHCII_jason_reseq

0.92

0.265

Isoniazid02

0.087

1.275

Rifampicin4

0.0

0.501

Ethambutol3

0.229

0.916

Meropenem3

0.244

0.264

Vancomycin16

-0.069

0.716

Rv2680_day32

-0.184

0.0

H37Rv_KO_MarP

-0.018

0.559

hypoxia_3wks

-3.007

0.578

hypoxia_6wks

-3.721

-1.825

glycerol

-0.13

-1.444

cholesterol

-0.325

-1.572

AJ

-0.501

0.104

Bibs02

0.338

-0.66

Bibs02c

-0.364

-0.571

BL6

-1.545

-2.2

BL6a

-0.881

-2.426

BXD01

-1.203

-1.284

BXD010

-0.875

-2.074

BXD011

-1.288

-1.905

BXD03

-2.275

-1.656

BXD04

-1.251

0.0

BXD05

-1.693

-1.264

BXD06

-1.451

-2.221

BXD07

-1.561

-2.304

BXD08

-0.695

-0.976

BXD09

-1.768

-1.64

CAST

-0.439

0.337

CCcont

-2.411

-2.554

DS01

-0.489

-0.703

DS02

-1.038

0.928

DS04

-0.402

1.665

DS0c

0.297

-0.102

GP01

0.047

1.249

GP02

-0.826

1.619

GP0c

-0.226

-0.126

NOD

-0.179

0.347

NZO

-0.282

-1.319

PWK

-0.492

0.688

H37Rv_KO_CtpC

-0.672

0.623

H37Rv_KO_CtpD

-2.176

-1.945

H37Rv_KO_Rv1272

0.019

0.834

H37Rv_KO_SugABC

0.117

-0.844

H37Rv_KO_MbtN

-0.222

-1.715

Trans05

0.38

-0.114

macrophage_unactivated

-2.08

-2.273

IL1

-2.308

-3.283

Rapamycin

-1.476

-3.069

Tcell

-1.352

-2.076

GMCSF

0.0

-2.778

IFNab

-1.66

-3.694

IFNg

-1.97

-2.536

IFNg_GMCSF1

-1.405

-2.13

Rv1432_day32

0.027

0.0

Rv1565c_day32

-0.139

1.238

secA2_input

-1.061

-0.429

delta_Rv3594

0.448

-0.832

delta_Rv3717

0.641

0.165

delta_Rv3811

0.573

-0.61

delta_Rv0954

-0.195

-1.499

PonA1

-0.504

0.092

EccD1_KO

0.25

0.793

EspI_KO

-0.18

-0.394

PE35_KO

0.429

0.435

PPE68_KO

0.941

1.901

glycerol2

0.265

-0.787

lignocerate

-0.55

-1.162

oleate

0.149

-0.32

phosphatidylcholine

0.043

-0.56

acetate

-0.823

-1.993

glucAc

-0.838

-2.721

Rv0950ko

-0.205

1.001

Rv1096ko

0.428

1.454

Rv3684ko

0.563

1.15

delta_otsA_trehalose

-0.231

0.564