Top 10 genes with highest correlation to Rv2003c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1934c/fadE17 | (cc=0.6073) | info on Rv1934c/fadE17 |
| Rv1688/mpg | (cc=0.6053) | info on Rv1688/mpg |
| Rv1736c/narX | (cc=0.5926) | info on Rv1736c/narX |
| Rv1999c/- | (cc=0.5643) | info on Rv1999c/- |
| Rv1030/kdpB | (cc=0.5559) | info on Rv1030/kdpB |
| Rv2064/cobG | (cc=0.522) | info on Rv2064/cobG |
| Rv2028c/- | (cc=0.5138) | info on Rv2028c/- |
| Rv1915/aceAa | (cc=0.5047) | info on Rv1915/aceAa |
| Rv1940/ribA1 | (cc=0.5001) | info on Rv1940/ribA1 |
| Rv3705A/- | (cc=0.4958) | info on Rv3705A/- |
Correlation of Rv2003c/- with Rv2028c/-
Normalized LFCs for Rv2003c/-:
(description and provenance of datasets)
| Rv2003c/- | Rv2028c/- | |
| Fe_supp_jason_reseq | -0.644 | -0.545 |
| low_pH_jason_reseq | -0.683 | 0.125 |
| NO_jason_reseq | 0.958 | 0.383 |
| B6_jason_reseq | 0.567 | 1.559 |
| MHCII_jason_reseq | 1.288 | 0.332 |
| Isoniazid02 | 1.48 | 0.201 |
| Rifampicin4 | 0.59 | -0.16 |
| Ethambutol3 | 1.445 | 2.402 |
| Meropenem3 | 0.328 | 0.701 |
| Vancomycin16 | 0.942 | -0.488 |
| Rv2680_day32 | 0.46 | 1.364 |
| H37Rv_KO_MarP | 0.428 | 0.023 |
| hypoxia_3wks | -0.411 | -0.794 |
| hypoxia_6wks | -0.106 | -0.896 |
| glycerol | 0.054 | 0.038 |
| cholesterol | 0.026 | -0.641 |
| AJ | 0.94 | -0.232 |
| Bibs02 | -0.409 | -0.531 |
| Bibs02c | 0.465 | -0.08 |
| BL6 | -0.479 | -1.159 |
| BL6a | -1.164 | -0.575 |
| BXD01 | -0.808 | -2.872 |
| BXD010 | -1.305 | -2.824 |
| BXD011 | -1.822 | -1.303 |
| BXD03 | -1.378 | -1.716 |
| BXD04 | -1.683 | -0.888 |
| BXD05 | -0.57 | -0.984 |
| BXD06 | -1.648 | -1.876 |
| BXD07 | -0.978 | -2.203 |
| BXD08 | -1.014 | -2.416 |
| BXD09 | -0.397 | -1.302 |
| CAST | -1.208 | -0.15 |
| CCcont | -1.286 | -1.338 |
| DS01 | 0.436 | 0.282 |
| DS02 | 0.562 | 0.643 |
| DS04 | 0.25 | -0.025 |
| DS0c | -0.187 | -0.041 |
| GP01 | 1.201 | 0.383 |
| GP02 | 0.316 | -1.4 |
| GP0c | 0.104 | -0.445 |
| NOD | -0.635 | -0.524 |
| NZO | -0.172 | 0.238 |
| PWK | -0.395 | -1.131 |
| H37Rv_KO_CtpC | -0.479 | -1.775 |
| H37Rv_KO_CtpD | -1.419 | -2.301 |
| H37Rv_KO_Rv1272 | -0.761 | -1.731 |
| H37Rv_KO_SugABC | -1.911 | -0.478 |
| H37Rv_KO_MbtN | 0.859 | 0.169 |
| Trans05 | 0.093 | -0.346 |
| macrophage_unactivated | -0.675 | -0.401 |
| IL1 | 0.421 | -1.181 |
| Rapamycin | 0.957 | -0.448 |
| Tcell | 0.313 | -2.108 |
| GMCSF | 0.605 | -0.65 |
| IFNab | 0.076 | -0.327 |
| IFNg | -0.73 | -0.241 |
| IFNg_GMCSF1 | 0.229 | -0.971 |
| Rv1432_day32 | 0.052 | -0.042 |
| Rv1565c_day32 | 0.126 | 0.043 |
| secA2_input | -0.46 | -1.603 |
| delta_Rv3594 | 0.433 | 0.251 |
| delta_Rv3717 | 0.306 | 0.842 |
| delta_Rv3811 | 0.696 | 0.929 |
| delta_Rv0954 | -1.058 | 0.703 |
| PonA1 | -1.27 | 0.208 |
| EccD1_KO | -1.769 | 0.98 |
| EspI_KO | -0.137 | 1.32 |
| PE35_KO | -0.513 | 0.222 |
| PPE68_KO | -0.477 | 0.694 |
| glycerol2 | 0.771 | 0.581 |
| lignocerate | 0.582 | 0.462 |
| oleate | 0.072 | -0.292 |
| phosphatidylcholine | 1.003 | 0.193 |
| acetate | 1.242 | 1.026 |
| glucAc | 0.923 | 0.572 |
| Rv0950ko | -0.703 | 1.544 |
| Rv1096ko | 1.134 | 0.875 |
| Rv3684ko | 1.605 | 0.95 |
| delta_otsA_trehalose | -0.765 | -0.438 |