Top 10 genes with highest correlation to Rv2003c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1934c/fadE17 | (cc=0.6073) | info on Rv1934c/fadE17 |
| Rv1688/mpg | (cc=0.6053) | info on Rv1688/mpg |
| Rv1736c/narX | (cc=0.5926) | info on Rv1736c/narX |
| Rv1999c/- | (cc=0.5643) | info on Rv1999c/- |
| Rv1030/kdpB | (cc=0.5559) | info on Rv1030/kdpB |
| Rv2064/cobG | (cc=0.522) | info on Rv2064/cobG |
| Rv2028c/- | (cc=0.5138) | info on Rv2028c/- |
| Rv1915/aceAa | (cc=0.5047) | info on Rv1915/aceAa |
| Rv1940/ribA1 | (cc=0.5001) | info on Rv1940/ribA1 |
| Rv3705A/- | (cc=0.4958) | info on Rv3705A/- |
Correlation of Rv2003c/- with Rv1736c/narX
Normalized LFCs for Rv2003c/-:
(description and provenance of datasets)
| Rv2003c/- | Rv1736c/narX | |
| Fe_supp_jason_reseq | -0.644 | -0.802 |
| low_pH_jason_reseq | -0.683 | -0.196 |
| NO_jason_reseq | 0.958 | -0.244 |
| B6_jason_reseq | 0.567 | 0.903 |
| MHCII_jason_reseq | 1.288 | 1.098 |
| Isoniazid02 | 1.48 | 0.327 |
| Rifampicin4 | 0.59 | -0.168 |
| Ethambutol3 | 1.445 | 0.465 |
| Meropenem3 | 0.328 | 0.14 |
| Vancomycin16 | 0.942 | -0.082 |
| Rv2680_day32 | 0.46 | -0.104 |
| H37Rv_KO_MarP | 0.428 | -0.55 |
| hypoxia_3wks | -0.411 | -0.307 |
| hypoxia_6wks | -0.106 | -0.666 |
| glycerol | 0.054 | 0.151 |
| cholesterol | 0.026 | -0.154 |
| AJ | 0.94 | 0.044 |
| Bibs02 | -0.409 | -0.136 |
| Bibs02c | 0.465 | 0.327 |
| BL6 | -0.479 | -1.479 |
| BL6a | -1.164 | -0.555 |
| BXD01 | -0.808 | -1.376 |
| BXD010 | -1.305 | -0.816 |
| BXD011 | -1.822 | -0.692 |
| BXD03 | -1.378 | -1.244 |
| BXD04 | -1.683 | -1.002 |
| BXD05 | -0.57 | -0.764 |
| BXD06 | -1.648 | -1.228 |
| BXD07 | -0.978 | -0.846 |
| BXD08 | -1.014 | -1.271 |
| BXD09 | -0.397 | -1.412 |
| CAST | -1.208 | -0.704 |
| CCcont | -1.286 | -2.033 |
| DS01 | 0.436 | -0.104 |
| DS02 | 0.562 | 0.321 |
| DS04 | 0.25 | -0.259 |
| DS0c | -0.187 | -0.096 |
| GP01 | 1.201 | -0.354 |
| GP02 | 0.316 | 0.318 |
| GP0c | 0.104 | -0.75 |
| NOD | -0.635 | -0.504 |
| NZO | -0.172 | -0.234 |
| PWK | -0.395 | -0.097 |
| H37Rv_KO_CtpC | -0.479 | -1.316 |
| H37Rv_KO_CtpD | -1.419 | -1.77 |
| H37Rv_KO_Rv1272 | -0.761 | -0.766 |
| H37Rv_KO_SugABC | -1.911 | -2.014 |
| H37Rv_KO_MbtN | 0.859 | -0.384 |
| Trans05 | 0.093 | -0.349 |
| macrophage_unactivated | -0.675 | -0.764 |
| IL1 | 0.421 | -0.451 |
| Rapamycin | 0.957 | 0.196 |
| Tcell | 0.313 | -0.401 |
| GMCSF | 0.605 | -0.069 |
| IFNab | 0.076 | -0.547 |
| IFNg | -0.73 | -0.818 |
| IFNg_GMCSF1 | 0.229 | 0.355 |
| Rv1432_day32 | 0.052 | -0.554 |
| Rv1565c_day32 | 0.126 | 1.025 |
| secA2_input | -0.46 | -0.856 |
| delta_Rv3594 | 0.433 | 0.22 |
| delta_Rv3717 | 0.306 | 0.0 |
| delta_Rv3811 | 0.696 | 0.617 |
| delta_Rv0954 | -1.058 | 0.186 |
| PonA1 | -1.27 | -0.152 |
| EccD1_KO | -1.769 | -0.092 |
| EspI_KO | -0.137 | -0.374 |
| PE35_KO | -0.513 | 0.236 |
| PPE68_KO | -0.477 | -0.227 |
| glycerol2 | 0.771 | -0.685 |
| lignocerate | 0.582 | -0.312 |
| oleate | 0.072 | -0.554 |
| phosphatidylcholine | 1.003 | -0.27 |
| acetate | 1.242 | -0.321 |
| glucAc | 0.923 | -0.31 |
| Rv0950ko | -0.703 | 0.259 |
| Rv1096ko | 1.134 | 0.461 |
| Rv3684ko | 1.605 | 0.0 |
| delta_otsA_trehalose | -0.765 | 0.371 |