Top 10 genes with highest correlation to Rv2003c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1934c/fadE17 | (cc=0.6073) | info on Rv1934c/fadE17 |
| Rv1688/mpg | (cc=0.6053) | info on Rv1688/mpg |
| Rv1736c/narX | (cc=0.5926) | info on Rv1736c/narX |
| Rv1999c/- | (cc=0.5643) | info on Rv1999c/- |
| Rv1030/kdpB | (cc=0.5559) | info on Rv1030/kdpB |
| Rv2064/cobG | (cc=0.522) | info on Rv2064/cobG |
| Rv2028c/- | (cc=0.5138) | info on Rv2028c/- |
| Rv1915/aceAa | (cc=0.5047) | info on Rv1915/aceAa |
| Rv1940/ribA1 | (cc=0.5001) | info on Rv1940/ribA1 |
| Rv3705A/- | (cc=0.4958) | info on Rv3705A/- |
Correlation of Rv2003c/- with Rv1934c/fadE17
Normalized LFCs for Rv2003c/-:
(description and provenance of datasets)
| Rv2003c/- | Rv1934c/fadE17 | |
| Fe_supp_jason_reseq | -0.644 | 0.311 |
| low_pH_jason_reseq | -0.683 | -0.217 |
| NO_jason_reseq | 0.958 | -0.134 |
| B6_jason_reseq | 0.567 | 1.089 |
| MHCII_jason_reseq | 1.288 | 1.165 |
| Isoniazid02 | 1.48 | 0.46 |
| Rifampicin4 | 0.59 | 0.65 |
| Ethambutol3 | 1.445 | 1.751 |
| Meropenem3 | 0.328 | 0.574 |
| Vancomycin16 | 0.942 | 0.236 |
| Rv2680_day32 | 0.46 | 0.938 |
| H37Rv_KO_MarP | 0.428 | 0.016 |
| hypoxia_3wks | -0.411 | 0.0 |
| hypoxia_6wks | -0.106 | -0.025 |
| glycerol | 0.054 | 0.584 |
| cholesterol | 0.026 | -0.513 |
| AJ | 0.94 | -0.109 |
| Bibs02 | -0.409 | 0.115 |
| Bibs02c | 0.465 | 0.432 |
| BL6 | -0.479 | -0.614 |
| BL6a | -1.164 | -0.232 |
| BXD01 | -0.808 | 0.517 |
| BXD010 | -1.305 | -0.299 |
| BXD011 | -1.822 | -0.405 |
| BXD03 | -1.378 | -0.737 |
| BXD04 | -1.683 | -1.165 |
| BXD05 | -0.57 | -1.203 |
| BXD06 | -1.648 | -0.237 |
| BXD07 | -0.978 | -0.334 |
| BXD08 | -1.014 | -0.963 |
| BXD09 | -0.397 | -0.351 |
| CAST | -1.208 | 0.06 |
| CCcont | -1.286 | -1.162 |
| DS01 | 0.436 | 0.178 |
| DS02 | 0.562 | 0.23 |
| DS04 | 0.25 | 0.159 |
| DS0c | -0.187 | 0.437 |
| GP01 | 1.201 | 0.938 |
| GP02 | 0.316 | 1.959 |
| GP0c | 0.104 | 0.025 |
| NOD | -0.635 | -0.264 |
| NZO | -0.172 | -1.319 |
| PWK | -0.395 | -0.259 |
| H37Rv_KO_CtpC | -0.479 | -0.621 |
| H37Rv_KO_CtpD | -1.419 | -0.791 |
| H37Rv_KO_Rv1272 | -0.761 | -0.933 |
| H37Rv_KO_SugABC | -1.911 | -0.705 |
| H37Rv_KO_MbtN | 0.859 | 1.247 |
| Trans05 | 0.093 | 0.235 |
| macrophage_unactivated | -0.675 | -0.294 |
| IL1 | 0.421 | 0.089 |
| Rapamycin | 0.957 | 0.838 |
| Tcell | 0.313 | 0.0 |
| GMCSF | 0.605 | 2.265 |
| IFNab | 0.076 | -0.481 |
| IFNg | -0.73 | -0.38 |
| IFNg_GMCSF1 | 0.229 | 0.185 |
| Rv1432_day32 | 0.052 | 0.216 |
| Rv1565c_day32 | 0.126 | 0.396 |
| secA2_input | -0.46 | -1.581 |
| delta_Rv3594 | 0.433 | 0.889 |
| delta_Rv3717 | 0.306 | 0.201 |
| delta_Rv3811 | 0.696 | 0.131 |
| delta_Rv0954 | -1.058 | -0.433 |
| PonA1 | -1.27 | 0.65 |
| EccD1_KO | -1.769 | 0.22 |
| EspI_KO | -0.137 | -1.109 |
| PE35_KO | -0.513 | 0.099 |
| PPE68_KO | -0.477 | 0.282 |
| glycerol2 | 0.771 | 0.696 |
| lignocerate | 0.582 | 0.195 |
| oleate | 0.072 | 1.106 |
| phosphatidylcholine | 1.003 | 0.934 |
| acetate | 1.242 | 0.136 |
| glucAc | 0.923 | -0.247 |
| Rv0950ko | -0.703 | 0.398 |
| Rv1096ko | 1.134 | 1.819 |
| Rv3684ko | 1.605 | 1.824 |
| delta_otsA_trehalose | -0.765 | -1.741 |