Top 10 genes with highest correlation to Rv1727/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1228/lpqX | (cc=0.6164) | info on Rv1228/lpqX |
| Rv3060c/- | (cc=0.5399) | info on Rv3060c/- |
| Rv3439c/- | (cc=0.5389) | info on Rv3439c/- |
| Rv1473/- | (cc=0.5338) | info on Rv1473/- |
| Rv2902c/rnhB | (cc=0.5049) | info on Rv2902c/rnhB |
| Rv1992c/ctpG | (cc=0.5016) | info on Rv1992c/ctpG |
| Rv3208A/TB9.4 | (cc=0.4957) | info on Rv3208A/TB9.4 |
| Rv0910/- | (cc=0.4855) | info on Rv0910/- |
| Rv0433/- | (cc=0.4855) | info on Rv0433/- |
| Rv1495/mazF4 | (cc=0.4851) | info on Rv1495/mazF4 |
Correlation of Rv1727/- with Rv2902c/rnhB
Normalized LFCs for Rv1727/-:
(description and provenance of datasets)
| Rv1727/- | Rv2902c/rnhB | |
| Fe_supp_jason_reseq | 0.027 | 0.393 |
| low_pH_jason_reseq | -0.718 | 0.806 |
| NO_jason_reseq | 0.299 | 1.239 |
| B6_jason_reseq | 1.146 | 1.308 |
| MHCII_jason_reseq | -0.728 | -0.026 |
| Isoniazid02 | 1.101 | 1.075 |
| Rifampicin4 | 0.945 | 0.769 |
| Ethambutol3 | 1.957 | 0.97 |
| Meropenem3 | 0.093 | 1.962 |
| Vancomycin16 | -0.122 | 0.47 |
| Rv2680_day32 | 0.681 | 0.93 |
| H37Rv_KO_MarP | -0.425 | -0.796 |
| hypoxia_3wks | -0.183 | 0.351 |
| hypoxia_6wks | -0.768 | 0.539 |
| glycerol | 0.607 | 0.301 |
| cholesterol | 1.003 | 0.068 |
| AJ | 0.082 | 0.553 |
| Bibs02 | -0.436 | 0.38 |
| Bibs02c | 0.285 | 0.109 |
| BL6 | -0.454 | -0.3 |
| BL6a | 0.27 | -0.436 |
| BXD01 | -0.679 | -1.098 |
| BXD010 | -1.64 | -0.29 |
| BXD011 | -0.903 | -0.358 |
| BXD03 | -0.66 | 0.071 |
| BXD04 | -0.928 | -1.043 |
| BXD05 | -0.021 | -0.369 |
| BXD06 | -1.357 | -0.12 |
| BXD07 | -0.758 | -0.679 |
| BXD08 | -0.38 | -0.365 |
| BXD09 | -0.344 | -0.738 |
| CAST | -0.704 | 0.269 |
| CCcont | -0.845 | -1.027 |
| DS01 | 0.245 | 0.263 |
| DS02 | -0.08 | 0.911 |
| DS04 | -0.327 | 0.131 |
| DS0c | -0.603 | 0.652 |
| GP01 | -1.319 | -1.102 |
| GP02 | 1.424 | 1.067 |
| GP0c | -0.603 | -0.26 |
| NOD | -0.9 | -0.228 |
| NZO | 0.091 | -0.829 |
| PWK | -0.909 | 0.303 |
| H37Rv_KO_CtpC | -1.309 | -1.133 |
| H37Rv_KO_CtpD | 0.914 | -0.304 |
| H37Rv_KO_Rv1272 | -0.461 | -0.778 |
| H37Rv_KO_SugABC | 0.238 | -1.451 |
| H37Rv_KO_MbtN | -0.529 | -0.42 |
| Trans05 | 0.292 | -0.377 |
| macrophage_unactivated | -0.925 | -0.556 |
| IL1 | -0.673 | -0.925 |
| Rapamycin | -0.055 | -0.801 |
| Tcell | 0.205 | 0.166 |
| GMCSF | 0.0 | -0.111 |
| IFNab | -0.952 | -0.983 |
| IFNg | -1.029 | -0.834 |
| IFNg_GMCSF1 | -1.1 | 0.223 |
| Rv1432_day32 | 0.0 | -0.175 |
| Rv1565c_day32 | 0.264 | 0.483 |
| secA2_input | -0.127 | 0.02 |
| delta_Rv3594 | 2.463 | 0.675 |
| delta_Rv3717 | 1.777 | 0.566 |
| delta_Rv3811 | 1.581 | 0.766 |
| delta_Rv0954 | 2.197 | 0.767 |
| PonA1 | 1.944 | 0.497 |
| EccD1_KO | 0.516 | -0.296 |
| EspI_KO | 0.682 | -0.713 |
| PE35_KO | 0.992 | -0.438 |
| PPE68_KO | 0.032 | -0.518 |
| glycerol2 | 0.552 | 0.185 |
| lignocerate | 0.591 | 0.0 |
| oleate | 0.797 | 0.859 |
| phosphatidylcholine | 1.008 | 0.536 |
| acetate | -0.318 | 0.161 |
| glucAc | 0.135 | 0.335 |
| Rv0950ko | -1.36 | -0.069 |
| Rv1096ko | -2.778 | -0.642 |
| Rv3684ko | -1.284 | 0.223 |
| delta_otsA_trehalose | 0.869 | 0.493 |