Top 10 genes with highest correlation to Rv1718/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1403c/- | (cc=0.6247) | info on Rv1403c/- |
| Rv1289/- | (cc=0.6185) | info on Rv1289/- |
| Rv0089/- | (cc=0.5555) | info on Rv0089/- |
| Rv0963c/- | (cc=0.5548) | info on Rv0963c/- |
| Rv0278c/PE_PGRS3 | (cc=0.551) | info on Rv0278c/PE_PGRS3 |
| Rv2426c/- | (cc=0.5476) | info on Rv2426c/- |
| Rv1281c/oppD | (cc=0.5182) | info on Rv1281c/oppD |
| Rv2919c/glnB | (cc=0.5137) | info on Rv2919c/glnB |
| Rv3081/- | (cc=0.5097) | info on Rv3081/- |
| Rv0226c/- | (cc=0.5072) | info on Rv0226c/- |
Correlation of Rv1718/- with Rv2919c/glnB
Normalized LFCs for Rv1718/-:
(description and provenance of datasets)
| Rv1718/- | Rv2919c/glnB | |
| Fe_supp_jason_reseq | 0.308 | 0.508 |
| low_pH_jason_reseq | -0.263 | 0.539 |
| NO_jason_reseq | 0.441 | -0.331 |
| B6_jason_reseq | 1.117 | 3.226 |
| MHCII_jason_reseq | 0.368 | 2.315 |
| Isoniazid02 | 0.017 | 0.146 |
| Rifampicin4 | -0.133 | -1.949 |
| Ethambutol3 | -0.338 | -0.505 |
| Meropenem3 | -0.167 | -0.763 |
| Vancomycin16 | -0.196 | -0.138 |
| Rv2680_day32 | -1.001 | 0.131 |
| H37Rv_KO_MarP | -0.048 | -1.841 |
| hypoxia_3wks | -1.105 | -0.347 |
| hypoxia_6wks | -0.374 | -0.658 |
| glycerol | 0.528 | -0.029 |
| cholesterol | 0.943 | 0.141 |
| AJ | -0.264 | 0.402 |
| Bibs02 | 1.484 | 1.428 |
| Bibs02c | 0.411 | -0.797 |
| BL6 | -1.198 | -1.492 |
| BL6a | -0.349 | -1.217 |
| BXD01 | -1.54 | 0.193 |
| BXD010 | 0.777 | -1.416 |
| BXD011 | -1.002 | -0.433 |
| BXD03 | -1.295 | -1.103 |
| BXD04 | -0.491 | 0.288 |
| BXD05 | -1.649 | -0.725 |
| BXD06 | -0.683 | -0.143 |
| BXD07 | -0.739 | -0.194 |
| BXD08 | -0.835 | -1.586 |
| BXD09 | -0.688 | -1.06 |
| CAST | 1.111 | 1.308 |
| CCcont | -0.466 | -0.209 |
| DS01 | 0.941 | 0.979 |
| DS02 | 1.095 | 0.857 |
| DS04 | 0.673 | -0.208 |
| DS0c | 1.259 | 0.855 |
| GP01 | 0.497 | 0.275 |
| GP02 | 0.486 | -0.955 |
| GP0c | -0.801 | 0.377 |
| NOD | -0.543 | -0.314 |
| NZO | 0.663 | -1.026 |
| PWK | -0.361 | 0.111 |
| H37Rv_KO_CtpC | -0.067 | 1.418 |
| H37Rv_KO_CtpD | -0.384 | -2.487 |
| H37Rv_KO_Rv1272 | -0.415 | -2.414 |
| H37Rv_KO_SugABC | -0.273 | -1.696 |
| H37Rv_KO_MbtN | -1.666 | -1.38 |
| Trans05 | 0.807 | -1.024 |
| macrophage_unactivated | -0.761 | 0.354 |
| IL1 | 0.071 | -0.119 |
| Rapamycin | -0.436 | 0.454 |
| Tcell | -1.447 | 0.124 |
| GMCSF | -0.269 | 0.296 |
| IFNab | -0.151 | 0.656 |
| IFNg | -0.762 | -1.513 |
| IFNg_GMCSF1 | -0.848 | 1.364 |
| Rv1432_day32 | -0.185 | 0.329 |
| Rv1565c_day32 | -0.287 | 0.0 |
| secA2_input | -1.11 | 0.163 |
| delta_Rv3594 | 0.211 | 1.41 |
| delta_Rv3717 | -0.473 | 1.305 |
| delta_Rv3811 | -0.269 | 0.831 |
| delta_Rv0954 | -1.105 | 0.435 |
| PonA1 | -1.477 | 1.887 |
| EccD1_KO | 0.289 | 0.898 |
| EspI_KO | 1.802 | 0.485 |
| PE35_KO | 0.916 | 2.042 |
| PPE68_KO | 0.765 | 1.181 |
| glycerol2 | 0.534 | 1.044 |
| lignocerate | 1.818 | 2.125 |
| oleate | -2.789 | -2.481 |
| phosphatidylcholine | 0.985 | 2.008 |
| acetate | 2.095 | 3.511 |
| glucAc | 1.951 | 2.806 |
| Rv0950ko | -0.232 | 1.508 |
| Rv1096ko | 0.853 | 1.176 |
| Rv3684ko | 0.174 | 0.314 |
| delta_otsA_trehalose | 0.363 | -0.366 |