Top 10 genes with highest correlation to Rv1718/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1403c/- | (cc=0.6247) | info on Rv1403c/- |
| Rv1289/- | (cc=0.6185) | info on Rv1289/- |
| Rv0089/- | (cc=0.5555) | info on Rv0089/- |
| Rv0963c/- | (cc=0.5548) | info on Rv0963c/- |
| Rv0278c/PE_PGRS3 | (cc=0.551) | info on Rv0278c/PE_PGRS3 |
| Rv2426c/- | (cc=0.5476) | info on Rv2426c/- |
| Rv1281c/oppD | (cc=0.5182) | info on Rv1281c/oppD |
| Rv2919c/glnB | (cc=0.5137) | info on Rv2919c/glnB |
| Rv3081/- | (cc=0.5097) | info on Rv3081/- |
| Rv0226c/- | (cc=0.5072) | info on Rv0226c/- |
Correlation of Rv1718/- with Rv1289/-
Normalized LFCs for Rv1718/-:
(description and provenance of datasets)
| Rv1718/- | Rv1289/- | |
| Fe_supp_jason_reseq | 0.308 | 0.666 |
| low_pH_jason_reseq | -0.263 | -0.099 |
| NO_jason_reseq | 0.441 | 0.659 |
| B6_jason_reseq | 1.117 | 1.077 |
| MHCII_jason_reseq | 0.368 | 0.6 |
| Isoniazid02 | 0.017 | 1.077 |
| Rifampicin4 | -0.133 | 0.162 |
| Ethambutol3 | -0.338 | 0.073 |
| Meropenem3 | -0.167 | 0.299 |
| Vancomycin16 | -0.196 | 0.334 |
| Rv2680_day32 | -1.001 | -1.138 |
| H37Rv_KO_MarP | -0.048 | -0.277 |
| hypoxia_3wks | -1.105 | -1.013 |
| hypoxia_6wks | -0.374 | 0.0 |
| glycerol | 0.528 | -0.54 |
| cholesterol | 0.943 | 0.208 |
| AJ | -0.264 | 0.024 |
| Bibs02 | 1.484 | -0.538 |
| Bibs02c | 0.411 | 0.547 |
| BL6 | -1.198 | -1.07 |
| BL6a | -0.349 | -0.608 |
| BXD01 | -1.54 | -0.634 |
| BXD010 | 0.777 | 0.395 |
| BXD011 | -1.002 | -0.707 |
| BXD03 | -1.295 | -0.847 |
| BXD04 | -0.491 | -1.276 |
| BXD05 | -1.649 | 0.24 |
| BXD06 | -0.683 | -0.374 |
| BXD07 | -0.739 | -0.652 |
| BXD08 | -0.835 | -1.233 |
| BXD09 | -0.688 | -0.962 |
| CAST | 1.111 | 1.485 |
| CCcont | -0.466 | -0.213 |
| DS01 | 0.941 | 0.441 |
| DS02 | 1.095 | 0.551 |
| DS04 | 0.673 | 1.06 |
| DS0c | 1.259 | 0.46 |
| GP01 | 0.497 | 0.242 |
| GP02 | 0.486 | -0.858 |
| GP0c | -0.801 | -0.551 |
| NOD | -0.543 | 1.041 |
| NZO | 0.663 | -0.192 |
| PWK | -0.361 | -0.02 |
| H37Rv_KO_CtpC | -0.067 | 1.16 |
| H37Rv_KO_CtpD | -0.384 | 0.911 |
| H37Rv_KO_Rv1272 | -0.415 | 0.718 |
| H37Rv_KO_SugABC | -0.273 | 0.547 |
| H37Rv_KO_MbtN | -1.666 | -0.184 |
| Trans05 | 0.807 | 0.857 |
| macrophage_unactivated | -0.761 | 0.335 |
| IL1 | 0.071 | 1.05 |
| Rapamycin | -0.436 | 0.055 |
| Tcell | -1.447 | -0.775 |
| GMCSF | -0.269 | 0.095 |
| IFNab | -0.151 | 0.85 |
| IFNg | -0.762 | 0.048 |
| IFNg_GMCSF1 | -0.848 | 0.738 |
| Rv1432_day32 | -0.185 | 0.129 |
| Rv1565c_day32 | -0.287 | 0.0 |
| secA2_input | -1.11 | -0.625 |
| delta_Rv3594 | 0.211 | -0.148 |
| delta_Rv3717 | -0.473 | -0.209 |
| delta_Rv3811 | -0.269 | -0.318 |
| delta_Rv0954 | -1.105 | -0.423 |
| PonA1 | -1.477 | -0.57 |
| EccD1_KO | 0.289 | 2.453 |
| EspI_KO | 1.802 | 1.118 |
| PE35_KO | 0.916 | 1.313 |
| PPE68_KO | 0.765 | 1.616 |
| glycerol2 | 0.534 | 1.801 |
| lignocerate | 1.818 | 2.489 |
| oleate | -2.789 | -0.961 |
| phosphatidylcholine | 0.985 | 2.531 |
| acetate | 2.095 | 2.534 |
| glucAc | 1.951 | 2.382 |
| Rv0950ko | -0.232 | -0.597 |
| Rv1096ko | 0.853 | -1.288 |
| Rv3684ko | 0.174 | -0.511 |
| delta_otsA_trehalose | 0.363 | -0.672 |