Top 10 genes with highest correlation to Rv1646/PE17:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2340c/PE_PGRS39 | (cc=0.6331) | info on Rv2340c/PE_PGRS39 |
| Rv0984/moaB2 | (cc=0.6285) | info on Rv0984/moaB2 |
| Rv1182/papA3 | (cc=0.5758) | info on Rv1182/papA3 |
| Rv3607c/folB | (cc=0.5729) | info on Rv3607c/folB |
| Rv0359/- | (cc=0.5596) | info on Rv0359/- |
| Rv2232/ptkA | (cc=0.5586) | info on Rv2232/ptkA |
| Rv3056/dinP | (cc=0.5542) | info on Rv3056/dinP |
| Rv3328c/sigJ | (cc=0.5478) | info on Rv3328c/sigJ |
| Rv0540/- | (cc=0.5406) | info on Rv0540/- |
| Rv0985c/mscL | (cc=0.5406) | info on Rv0985c/mscL |
Correlation of Rv1646/PE17 with Rv0359/-
Normalized LFCs for Rv1646/PE17:
(description and provenance of datasets)
| Rv1646/PE17 | Rv0359/- | |
| Fe_supp_jason_reseq | 0.358 | 0.095 |
| low_pH_jason_reseq | -0.348 | -1.012 |
| NO_jason_reseq | 0.181 | 0.837 |
| B6_jason_reseq | 0.787 | 0.692 |
| MHCII_jason_reseq | 0.025 | 1.3 |
| Isoniazid02 | 0.661 | 0.764 |
| Rifampicin4 | 0.439 | 0.097 |
| Ethambutol3 | 0.48 | 0.086 |
| Meropenem3 | -0.279 | 0.109 |
| Vancomycin16 | -0.167 | -0.17 |
| Rv2680_day32 | 0.621 | -0.023 |
| H37Rv_KO_MarP | -0.195 | 0.272 |
| hypoxia_3wks | 0.267 | -0.12 |
| hypoxia_6wks | -0.654 | -0.079 |
| glycerol | 0.329 | 0.453 |
| cholesterol | 0.325 | -0.176 |
| AJ | 0.948 | 0.363 |
| Bibs02 | 0.13 | 0.277 |
| Bibs02c | 0.606 | 0.053 |
| BL6 | -0.783 | -0.976 |
| BL6a | 0.445 | -0.726 |
| BXD01 | 0.031 | -0.705 |
| BXD010 | -0.225 | -0.867 |
| BXD011 | -0.667 | -0.706 |
| BXD03 | -0.788 | -1.073 |
| BXD04 | 0.394 | -1.555 |
| BXD05 | -0.054 | -1.302 |
| BXD06 | -0.508 | -1.334 |
| BXD07 | -0.498 | -1.084 |
| BXD08 | 0.082 | -1.029 |
| BXD09 | -0.457 | -1.134 |
| CAST | 1.018 | 0.657 |
| CCcont | -0.333 | -1.909 |
| DS01 | 0.631 | 0.53 |
| DS02 | 0.597 | 0.485 |
| DS04 | 0.396 | 0.111 |
| DS0c | 1.196 | 0.528 |
| GP01 | 0.043 | 0.353 |
| GP02 | 0.312 | 0.863 |
| GP0c | 0.025 | -0.377 |
| NOD | 0.765 | 0.135 |
| NZO | 0.525 | 0.097 |
| PWK | 0.479 | 0.115 |
| H37Rv_KO_CtpC | 0.071 | -1.181 |
| H37Rv_KO_CtpD | -0.623 | -0.874 |
| H37Rv_KO_Rv1272 | -0.306 | -1.584 |
| H37Rv_KO_SugABC | -0.135 | -0.397 |
| H37Rv_KO_MbtN | 0.468 | -0.62 |
| Trans05 | -0.072 | -0.053 |
| macrophage_unactivated | -0.729 | -2.093 |
| IL1 | -1.103 | -1.848 |
| Rapamycin | -1.264 | -1.393 |
| Tcell | -0.026 | -1.092 |
| GMCSF | -0.855 | -1.09 |
| IFNab | -1.403 | -2.053 |
| IFNg | -1.213 | -1.05 |
| IFNg_GMCSF1 | -0.698 | -0.594 |
| Rv1432_day32 | -0.339 | 0.786 |
| Rv1565c_day32 | -0.488 | -0.547 |
| secA2_input | -0.067 | 0.38 |
| delta_Rv3594 | 0.219 | -1.115 |
| delta_Rv3717 | -0.447 | 0.013 |
| delta_Rv3811 | 0.089 | -1.166 |
| delta_Rv0954 | -0.167 | -0.841 |
| PonA1 | 0.194 | -0.262 |
| EccD1_KO | 0.49 | 0.062 |
| EspI_KO | 0.351 | 0.054 |
| PE35_KO | 0.397 | -0.747 |
| PPE68_KO | 0.873 | -0.982 |
| glycerol2 | 0.573 | -0.053 |
| lignocerate | 0.32 | -0.349 |
| oleate | 0.763 | 0.023 |
| phosphatidylcholine | 0.882 | -0.038 |
| acetate | -0.253 | -0.72 |
| glucAc | -0.363 | -0.134 |
| Rv0950ko | 0.606 | 0.597 |
| Rv1096ko | -0.817 | 0.881 |
| Rv3684ko | -0.321 | 0.648 |
| delta_otsA_trehalose | -1.123 | -2.016 |