Top 10 genes with highest correlation to Rv1646/PE17:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2340c/PE_PGRS39 | (cc=0.6331) | info on Rv2340c/PE_PGRS39 |
| Rv0984/moaB2 | (cc=0.6285) | info on Rv0984/moaB2 |
| Rv1182/papA3 | (cc=0.5758) | info on Rv1182/papA3 |
| Rv3607c/folB | (cc=0.5729) | info on Rv3607c/folB |
| Rv0359/- | (cc=0.5596) | info on Rv0359/- |
| Rv2232/ptkA | (cc=0.5586) | info on Rv2232/ptkA |
| Rv3056/dinP | (cc=0.5542) | info on Rv3056/dinP |
| Rv3328c/sigJ | (cc=0.5478) | info on Rv3328c/sigJ |
| Rv0540/- | (cc=0.5406) | info on Rv0540/- |
| Rv0985c/mscL | (cc=0.5406) | info on Rv0985c/mscL |
Correlation of Rv1646/PE17 with Rv2340c/PE_PGRS39
Normalized LFCs for Rv1646/PE17:
(description and provenance of datasets)
| Rv1646/PE17 | Rv2340c/PE_PGRS39 | |
| Fe_supp_jason_reseq | 0.358 | -0.063 |
| low_pH_jason_reseq | -0.348 | -0.452 |
| NO_jason_reseq | 0.181 | -0.417 |
| B6_jason_reseq | 0.787 | 0.657 |
| MHCII_jason_reseq | 0.025 | 0.619 |
| Isoniazid02 | 0.661 | 1.157 |
| Rifampicin4 | 0.439 | 0.485 |
| Ethambutol3 | 0.48 | 1.549 |
| Meropenem3 | -0.279 | 0.728 |
| Vancomycin16 | -0.167 | 0.061 |
| Rv2680_day32 | 0.621 | -0.465 |
| H37Rv_KO_MarP | -0.195 | -0.302 |
| hypoxia_3wks | 0.267 | -0.774 |
| hypoxia_6wks | -0.654 | -0.666 |
| glycerol | 0.329 | 0.65 |
| cholesterol | 0.325 | 0.315 |
| AJ | 0.948 | 0.565 |
| Bibs02 | 0.13 | 0.984 |
| Bibs02c | 0.606 | 0.679 |
| BL6 | -0.783 | -0.16 |
| BL6a | 0.445 | 0.014 |
| BXD01 | 0.031 | -0.58 |
| BXD010 | -0.225 | -0.687 |
| BXD011 | -0.667 | -0.737 |
| BXD03 | -0.788 | -0.566 |
| BXD04 | 0.394 | 0.035 |
| BXD05 | -0.054 | -0.068 |
| BXD06 | -0.508 | -0.939 |
| BXD07 | -0.498 | -0.624 |
| BXD08 | 0.082 | -0.277 |
| BXD09 | -0.457 | -0.626 |
| CAST | 1.018 | 0.794 |
| CCcont | -0.333 | -0.278 |
| DS01 | 0.631 | 0.956 |
| DS02 | 0.597 | 0.993 |
| DS04 | 0.396 | 0.45 |
| DS0c | 1.196 | 0.94 |
| GP01 | 0.043 | -0.24 |
| GP02 | 0.312 | 0.643 |
| GP0c | 0.025 | -0.111 |
| NOD | 0.765 | -0.218 |
| NZO | 0.525 | 0.48 |
| PWK | 0.479 | 0.672 |
| H37Rv_KO_CtpC | 0.071 | -0.891 |
| H37Rv_KO_CtpD | -0.623 | -0.009 |
| H37Rv_KO_Rv1272 | -0.306 | 0.232 |
| H37Rv_KO_SugABC | -0.135 | 0.386 |
| H37Rv_KO_MbtN | 0.468 | 0.239 |
| Trans05 | -0.072 | 0.28 |
| macrophage_unactivated | -0.729 | -1.004 |
| IL1 | -1.103 | -0.736 |
| Rapamycin | -1.264 | -0.62 |
| Tcell | -0.026 | -0.978 |
| GMCSF | -0.855 | -0.747 |
| IFNab | -1.403 | -0.429 |
| IFNg | -1.213 | -0.526 |
| IFNg_GMCSF1 | -0.698 | -0.154 |
| Rv1432_day32 | -0.339 | 0.352 |
| Rv1565c_day32 | -0.488 | 0.051 |
| secA2_input | -0.067 | 0.512 |
| delta_Rv3594 | 0.219 | -0.207 |
| delta_Rv3717 | -0.447 | -0.44 |
| delta_Rv3811 | 0.089 | -0.007 |
| delta_Rv0954 | -0.167 | 0.172 |
| PonA1 | 0.194 | -0.128 |
| EccD1_KO | 0.49 | 0.697 |
| EspI_KO | 0.351 | 0.211 |
| PE35_KO | 0.397 | 0.117 |
| PPE68_KO | 0.873 | 0.038 |
| glycerol2 | 0.573 | -0.041 |
| lignocerate | 0.32 | 0.516 |
| oleate | 0.763 | 0.0 |
| phosphatidylcholine | 0.882 | 0.494 |
| acetate | -0.253 | 0.116 |
| glucAc | -0.363 | 0.086 |
| Rv0950ko | 0.606 | 0.555 |
| Rv1096ko | -0.817 | -0.537 |
| Rv3684ko | -0.321 | -0.442 |
| delta_otsA_trehalose | -1.123 | -0.722 |