Top 10 genes with highest correlation to Rv1604/impA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3421c/- | (cc=0.5959) | info on Rv3421c/- |
| Rv3232c/ppk2 | (cc=0.5911) | info on Rv3232c/ppk2 |
| Rv3146/nuoB | (cc=0.5908) | info on Rv3146/nuoB |
| Rv3150/nuoF | (cc=0.5887) | info on Rv3150/nuoF |
| Rv0055/rpsR1 | (cc=0.5864) | info on Rv0055/rpsR1 |
| Rv3149/nuoE | (cc=0.5737) | info on Rv3149/nuoE |
| Rv0508/- | (cc=0.5703) | info on Rv0508/- |
| Rv2575/- | (cc=0.5666) | info on Rv2575/- |
| Rv3152/nuoH | (cc=0.5598) | info on Rv3152/nuoH |
| Rv3148/nuoD | (cc=0.5465) | info on Rv3148/nuoD |
Correlation of Rv1604/impA with Rv3421c/-
Normalized LFCs for Rv1604/impA:
(description and provenance of datasets)
| Rv1604/impA | Rv3421c/- | |
| Fe_supp_jason_reseq | -1.397 | -1.268 |
| low_pH_jason_reseq | -0.607 | 0.157 |
| NO_jason_reseq | -0.953 | 2.221 |
| B6_jason_reseq | -0.616 | 0.53 |
| MHCII_jason_reseq | -1.057 | -2.712 |
| Isoniazid02 | 0.134 | -0.201 |
| Rifampicin4 | 0.482 | 2.134 |
| Ethambutol3 | 0.191 | 1.135 |
| Meropenem3 | 0.31 | 0.648 |
| Vancomycin16 | 0.183 | 0.923 |
| Rv2680_day32 | -1.187 | 0.05 |
| H37Rv_KO_MarP | -0.351 | 1.008 |
| hypoxia_3wks | 0.439 | -1.224 |
| hypoxia_6wks | 0.0 | -0.411 |
| glycerol | 0.275 | 1.279 |
| cholesterol | 1.006 | -0.89 |
| AJ | 0.193 | 0.698 |
| Bibs02 | -0.697 | 0.103 |
| Bibs02c | 0.965 | -0.258 |
| BL6 | 1.53 | 1.757 |
| BL6a | 1.092 | 1.492 |
| BXD01 | 1.839 | 2.681 |
| BXD010 | 1.381 | 2.829 |
| BXD011 | 1.175 | 2.128 |
| BXD03 | 1.037 | 1.94 |
| BXD04 | 1.619 | 3.241 |
| BXD05 | 1.795 | 2.264 |
| BXD06 | 1.149 | 2.67 |
| BXD07 | 1.463 | 2.084 |
| BXD08 | 1.697 | 1.965 |
| BXD09 | 1.227 | 1.816 |
| CAST | 0.537 | 1.86 |
| CCcont | 1.743 | 2.288 |
| DS01 | -0.216 | -0.802 |
| DS02 | -0.34 | -0.922 |
| DS04 | -1.405 | 0.11 |
| DS0c | -0.129 | -0.737 |
| GP01 | -0.508 | -0.607 |
| GP02 | 0.871 | -0.353 |
| GP0c | 0.209 | -0.077 |
| NOD | 0.065 | 1.422 |
| NZO | 1.357 | 0.22 |
| PWK | -0.374 | 2.568 |
| H37Rv_KO_CtpC | 1.611 | -0.096 |
| H37Rv_KO_CtpD | 1.152 | 1.298 |
| H37Rv_KO_Rv1272 | -0.174 | 0.542 |
| H37Rv_KO_SugABC | 1.77 | 2.209 |
| H37Rv_KO_MbtN | -0.437 | 0.963 |
| Trans05 | 0.449 | 0.827 |
| macrophage_unactivated | -0.051 | -1.146 |
| IL1 | -0.098 | -1.391 |
| Rapamycin | -1.062 | -1.114 |
| Tcell | -0.27 | 0.0 |
| GMCSF | -0.652 | -0.108 |
| IFNab | 0.42 | 1.255 |
| IFNg | -0.711 | -2.079 |
| IFNg_GMCSF1 | -0.657 | -1.141 |
| Rv1432_day32 | 0.681 | -0.804 |
| Rv1565c_day32 | 0.381 | -0.842 |
| secA2_input | -0.146 | -0.424 |
| delta_Rv3594 | -0.707 | -2.492 |
| delta_Rv3717 | -1.091 | -0.142 |
| delta_Rv3811 | 0.134 | -1.09 |
| delta_Rv0954 | -0.963 | -1.093 |
| PonA1 | -0.261 | -0.56 |
| EccD1_KO | -0.523 | -0.372 |
| EspI_KO | -0.453 | -0.322 |
| PE35_KO | -0.178 | 0.23 |
| PPE68_KO | -0.618 | -0.857 |
| glycerol2 | 0.614 | -0.115 |
| lignocerate | 1.294 | 0.838 |
| oleate | 0.621 | -0.373 |
| phosphatidylcholine | 1.053 | 0.496 |
| acetate | 1.285 | 2.545 |
| glucAc | 1.143 | 1.892 |
| Rv0950ko | 1.414 | 1.462 |
| Rv1096ko | 1.08 | 0.109 |
| Rv3684ko | 0.35 | 1.916 |
| delta_otsA_trehalose | 1.383 | -0.477 |