Top 10 genes with highest correlation to Rv1604/impA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3421c/- | (cc=0.5959) | info on Rv3421c/- |
| Rv3232c/ppk2 | (cc=0.5911) | info on Rv3232c/ppk2 |
| Rv3146/nuoB | (cc=0.5908) | info on Rv3146/nuoB |
| Rv3150/nuoF | (cc=0.5887) | info on Rv3150/nuoF |
| Rv0055/rpsR1 | (cc=0.5864) | info on Rv0055/rpsR1 |
| Rv3149/nuoE | (cc=0.5737) | info on Rv3149/nuoE |
| Rv0508/- | (cc=0.5703) | info on Rv0508/- |
| Rv2575/- | (cc=0.5666) | info on Rv2575/- |
| Rv3152/nuoH | (cc=0.5598) | info on Rv3152/nuoH |
| Rv3148/nuoD | (cc=0.5465) | info on Rv3148/nuoD |
Correlation of Rv1604/impA with Rv0508/-
Normalized LFCs for Rv1604/impA:
(description and provenance of datasets)
| Rv1604/impA | Rv0508/- | |
| Fe_supp_jason_reseq | -1.397 | -0.597 |
| low_pH_jason_reseq | -0.607 | 0.888 |
| NO_jason_reseq | -0.953 | -0.034 |
| B6_jason_reseq | -0.616 | -0.166 |
| MHCII_jason_reseq | -1.057 | -2.182 |
| Isoniazid02 | 0.134 | -1.43 |
| Rifampicin4 | 0.482 | 1.928 |
| Ethambutol3 | 0.191 | -0.213 |
| Meropenem3 | 0.31 | -0.108 |
| Vancomycin16 | 0.183 | -0.212 |
| Rv2680_day32 | -1.187 | -0.264 |
| H37Rv_KO_MarP | -0.351 | -0.011 |
| hypoxia_3wks | 0.439 | -0.65 |
| hypoxia_6wks | 0.0 | 1.157 |
| glycerol | 0.275 | 0.436 |
| cholesterol | 1.006 | 0.016 |
| AJ | 0.193 | -0.815 |
| Bibs02 | -0.697 | -0.922 |
| Bibs02c | 0.965 | 0.749 |
| BL6 | 1.53 | 1.045 |
| BL6a | 1.092 | 0.633 |
| BXD01 | 1.839 | 1.28 |
| BXD010 | 1.381 | 1.412 |
| BXD011 | 1.175 | 1.732 |
| BXD03 | 1.037 | 1.05 |
| BXD04 | 1.619 | 1.956 |
| BXD05 | 1.795 | 1.179 |
| BXD06 | 1.149 | 1.882 |
| BXD07 | 1.463 | 1.13 |
| BXD08 | 1.697 | 1.647 |
| BXD09 | 1.227 | 0.58 |
| CAST | 0.537 | 0.833 |
| CCcont | 1.743 | 0.303 |
| DS01 | -0.216 | 0.659 |
| DS02 | -0.34 | 0.241 |
| DS04 | -1.405 | -0.386 |
| DS0c | -0.129 | -1.948 |
| GP01 | -0.508 | -0.951 |
| GP02 | 0.871 | 0.6 |
| GP0c | 0.209 | -1.252 |
| NOD | 0.065 | 0.436 |
| NZO | 1.357 | -0.022 |
| PWK | -0.374 | 0.664 |
| H37Rv_KO_CtpC | 1.611 | 1.392 |
| H37Rv_KO_CtpD | 1.152 | 0.9 |
| H37Rv_KO_Rv1272 | -0.174 | 0.393 |
| H37Rv_KO_SugABC | 1.77 | 0.901 |
| H37Rv_KO_MbtN | -0.437 | 1.748 |
| Trans05 | 0.449 | 0.38 |
| macrophage_unactivated | -0.051 | -1.023 |
| IL1 | -0.098 | -1.916 |
| Rapamycin | -1.062 | -2.053 |
| Tcell | -0.27 | 0.417 |
| GMCSF | -0.652 | 0.444 |
| IFNab | 0.42 | 0.133 |
| IFNg | -0.711 | -0.51 |
| IFNg_GMCSF1 | -0.657 | -0.874 |
| Rv1432_day32 | 0.681 | 0.125 |
| Rv1565c_day32 | 0.381 | -1.185 |
| secA2_input | -0.146 | -0.238 |
| delta_Rv3594 | -0.707 | -2.065 |
| delta_Rv3717 | -1.091 | -1.448 |
| delta_Rv3811 | 0.134 | -0.33 |
| delta_Rv0954 | -0.963 | -0.698 |
| PonA1 | -0.261 | -0.612 |
| EccD1_KO | -0.523 | 0.382 |
| EspI_KO | -0.453 | 0.222 |
| PE35_KO | -0.178 | -0.7 |
| PPE68_KO | -0.618 | 0.086 |
| glycerol2 | 0.614 | -0.132 |
| lignocerate | 1.294 | 0.402 |
| oleate | 0.621 | -0.17 |
| phosphatidylcholine | 1.053 | 0.543 |
| acetate | 1.285 | 0.12 |
| glucAc | 1.143 | -0.034 |
| Rv0950ko | 1.414 | 0.268 |
| Rv1096ko | 1.08 | -0.642 |
| Rv3684ko | 0.35 | -0.747 |
| delta_otsA_trehalose | 1.383 | 0.493 |