Top 10 genes with highest correlation to Rv1604/impA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3421c/- | (cc=0.5959) | info on Rv3421c/- |
| Rv3232c/ppk2 | (cc=0.5911) | info on Rv3232c/ppk2 |
| Rv3146/nuoB | (cc=0.5908) | info on Rv3146/nuoB |
| Rv3150/nuoF | (cc=0.5887) | info on Rv3150/nuoF |
| Rv0055/rpsR1 | (cc=0.5864) | info on Rv0055/rpsR1 |
| Rv3149/nuoE | (cc=0.5737) | info on Rv3149/nuoE |
| Rv0508/- | (cc=0.5703) | info on Rv0508/- |
| Rv2575/- | (cc=0.5666) | info on Rv2575/- |
| Rv3152/nuoH | (cc=0.5598) | info on Rv3152/nuoH |
| Rv3148/nuoD | (cc=0.5465) | info on Rv3148/nuoD |
Correlation of Rv1604/impA with Rv3232c/ppk2
Normalized LFCs for Rv1604/impA:
(description and provenance of datasets)
| Rv1604/impA | Rv3232c/ppk2 | |
| Fe_supp_jason_reseq | -1.397 | -0.068 |
| low_pH_jason_reseq | -0.607 | -1.066 |
| NO_jason_reseq | -0.953 | -1.047 |
| B6_jason_reseq | -0.616 | -1.198 |
| MHCII_jason_reseq | -1.057 | -1.093 |
| Isoniazid02 | 0.134 | 0.221 |
| Rifampicin4 | 0.482 | -0.233 |
| Ethambutol3 | 0.191 | 0.328 |
| Meropenem3 | 0.31 | -0.364 |
| Vancomycin16 | 0.183 | -0.342 |
| Rv2680_day32 | -1.187 | 0.064 |
| H37Rv_KO_MarP | -0.351 | -0.037 |
| hypoxia_3wks | 0.439 | -1.435 |
| hypoxia_6wks | 0.0 | -1.128 |
| glycerol | 0.275 | -0.607 |
| cholesterol | 1.006 | -0.317 |
| AJ | 0.193 | 0.56 |
| Bibs02 | -0.697 | 0.009 |
| Bibs02c | 0.965 | 0.593 |
| BL6 | 1.53 | 0.924 |
| BL6a | 1.092 | 1.425 |
| BXD01 | 1.839 | 1.132 |
| BXD010 | 1.381 | 0.856 |
| BXD011 | 1.175 | 0.862 |
| BXD03 | 1.037 | 1.061 |
| BXD04 | 1.619 | 0.856 |
| BXD05 | 1.795 | 1.516 |
| BXD06 | 1.149 | 1.003 |
| BXD07 | 1.463 | 0.976 |
| BXD08 | 1.697 | 1.19 |
| BXD09 | 1.227 | 1.098 |
| CAST | 0.537 | 0.067 |
| CCcont | 1.743 | 0.915 |
| DS01 | -0.216 | 0.407 |
| DS02 | -0.34 | 0.31 |
| DS04 | -1.405 | -0.436 |
| DS0c | -0.129 | 0.976 |
| GP01 | -0.508 | -0.087 |
| GP02 | 0.871 | 0.119 |
| GP0c | 0.209 | -0.007 |
| NOD | 0.065 | -0.244 |
| NZO | 1.357 | 0.377 |
| PWK | -0.374 | -0.068 |
| H37Rv_KO_CtpC | 1.611 | 1.53 |
| H37Rv_KO_CtpD | 1.152 | 1.154 |
| H37Rv_KO_Rv1272 | -0.174 | 0.961 |
| H37Rv_KO_SugABC | 1.77 | 1.017 |
| H37Rv_KO_MbtN | -0.437 | 1.109 |
| Trans05 | 0.449 | 1.166 |
| macrophage_unactivated | -0.051 | 0.489 |
| IL1 | -0.098 | -0.35 |
| Rapamycin | -1.062 | -0.35 |
| Tcell | -0.27 | -0.248 |
| GMCSF | -0.652 | -0.063 |
| IFNab | 0.42 | 0.284 |
| IFNg | -0.711 | -0.465 |
| IFNg_GMCSF1 | -0.657 | 0.119 |
| Rv1432_day32 | 0.681 | 0.961 |
| Rv1565c_day32 | 0.381 | 0.126 |
| secA2_input | -0.146 | 0.111 |
| delta_Rv3594 | -0.707 | 0.234 |
| delta_Rv3717 | -1.091 | -0.279 |
| delta_Rv3811 | 0.134 | 0.086 |
| delta_Rv0954 | -0.963 | 0.044 |
| PonA1 | -0.261 | -0.224 |
| EccD1_KO | -0.523 | 0.293 |
| EspI_KO | -0.453 | 0.605 |
| PE35_KO | -0.178 | 0.443 |
| PPE68_KO | -0.618 | 0.272 |
| glycerol2 | 0.614 | 0.807 |
| lignocerate | 1.294 | 0.594 |
| oleate | 0.621 | 0.44 |
| phosphatidylcholine | 1.053 | 0.44 |
| acetate | 1.285 | -0.301 |
| glucAc | 1.143 | 0.131 |
| Rv0950ko | 1.414 | 0.235 |
| Rv1096ko | 1.08 | -0.069 |
| Rv3684ko | 0.35 | 0.246 |
| delta_otsA_trehalose | 1.383 | 0.616 |