Top 10 genes with highest correlation to Rv1516c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1528c/papA4 | (cc=0.5471) | info on Rv1528c/papA4 |
| Rv1453/- | (cc=0.4938) | info on Rv1453/- |
| Rv2915c/- | (cc=0.4726) | info on Rv2915c/- |
| Rv0899/ompA | (cc=0.4622) | info on Rv0899/ompA |
| Rv0802c/- | (cc=0.4612) | info on Rv0802c/- |
| Rv1542c/glbN | (cc=0.4583) | info on Rv1542c/glbN |
| Rv2331/- | (cc=0.4543) | info on Rv2331/- |
| Rv2681/- | (cc=0.4529) | info on Rv2681/- |
| Rv2432c/- | (cc=0.4464) | info on Rv2432c/- |
| Rv2328/PE23 | (cc=0.4391) | info on Rv2328/PE23 |
Correlation of Rv1516c/- with Rv0899/ompA
Normalized LFCs for Rv1516c/-:
(description and provenance of datasets)
| Rv1516c/- | Rv0899/ompA | |
| Fe_supp_jason_reseq | 0.257 | -0.253 |
| low_pH_jason_reseq | -1.027 | -0.795 |
| NO_jason_reseq | -0.601 | -0.651 |
| B6_jason_reseq | 0.712 | 1.151 |
| MHCII_jason_reseq | 1.498 | 1.096 |
| Isoniazid02 | 0.16 | -0.125 |
| Rifampicin4 | 0.043 | 0.558 |
| Ethambutol3 | 0.259 | 0.309 |
| Meropenem3 | 0.956 | -0.034 |
| Vancomycin16 | 0.085 | 0.483 |
| Rv2680_day32 | -0.913 | -0.012 |
| H37Rv_KO_MarP | 0.294 | 0.282 |
| hypoxia_3wks | -0.116 | 0.0 |
| hypoxia_6wks | -0.152 | -0.359 |
| glycerol | 0.369 | -0.974 |
| cholesterol | -1.422 | -0.597 |
| AJ | -0.044 | -0.662 |
| Bibs02 | 0.244 | 0.733 |
| Bibs02c | 0.75 | -0.794 |
| BL6 | -0.401 | 0.411 |
| BL6a | -0.057 | -0.595 |
| BXD01 | -0.383 | 0.795 |
| BXD010 | 0.048 | 0.689 |
| BXD011 | 0.376 | -0.345 |
| BXD03 | 0.448 | 0.226 |
| BXD04 | -0.073 | -0.133 |
| BXD05 | 0.84 | -0.128 |
| BXD06 | 0.109 | -0.094 |
| BXD07 | 0.339 | 0.219 |
| BXD08 | 0.494 | 0.689 |
| BXD09 | -0.041 | 0.108 |
| CAST | 0.365 | 0.177 |
| CCcont | -0.229 | 0.321 |
| DS01 | 0.648 | 0.327 |
| DS02 | -0.613 | 0.838 |
| DS04 | 1.45 | 0.306 |
| DS0c | 1.026 | 0.695 |
| GP01 | -2.127 | -1.872 |
| GP02 | -2.085 | -1.771 |
| GP0c | -2.068 | -1.435 |
| NOD | 0.835 | -0.449 |
| NZO | 0.396 | 0.215 |
| PWK | 0.523 | 0.348 |
| H37Rv_KO_CtpC | -0.031 | 0.192 |
| H37Rv_KO_CtpD | -0.037 | -1.398 |
| H37Rv_KO_Rv1272 | -0.452 | -2.109 |
| H37Rv_KO_SugABC | -1.576 | -1.529 |
| H37Rv_KO_MbtN | -0.04 | -0.844 |
| Trans05 | 0.717 | -0.678 |
| macrophage_unactivated | 0.035 | 0.0 |
| IL1 | -0.753 | -0.917 |
| Rapamycin | -0.74 | -1.083 |
| Tcell | -0.658 | -0.173 |
| GMCSF | 0.227 | -0.76 |
| IFNab | -0.571 | -1.134 |
| IFNg | -0.54 | -0.714 |
| IFNg_GMCSF1 | 0.104 | -1.04 |
| Rv1432_day32 | -0.442 | -0.412 |
| Rv1565c_day32 | 1.218 | -0.199 |
| secA2_input | 1.902 | 0.881 |
| delta_Rv3594 | -1.133 | 1.958 |
| delta_Rv3717 | -0.669 | 1.258 |
| delta_Rv3811 | -0.763 | 0.766 |
| delta_Rv0954 | 0.979 | 1.005 |
| PonA1 | -0.08 | 1.114 |
| EccD1_KO | 0.118 | 1.253 |
| EspI_KO | 0.491 | 0.622 |
| PE35_KO | 1.076 | 0.283 |
| PPE68_KO | 1.043 | 1.459 |
| glycerol2 | -0.154 | -0.025 |
| lignocerate | 0.677 | 0.638 |
| oleate | 0.0 | -0.693 |
| phosphatidylcholine | 0.497 | 0.261 |
| acetate | 0.851 | 0.953 |
| glucAc | 0.662 | 1.757 |
| Rv0950ko | -0.458 | 0.184 |
| Rv1096ko | -0.404 | -0.609 |
| Rv3684ko | 0.593 | -0.662 |
| delta_otsA_trehalose | 1.161 | 0.048 |