TnSeqCorr

Top 10 genes with highest correlation to Rv1491c/-:

update plotcorrelationlink to info on gene
Rv3050c/- (cc=0.6229) info on Rv3050c/-
Rv3818/- (cc=0.6165) info on Rv3818/-
Rv3794/embA (cc=0.6065) info on Rv3794/embA
Rv2584c/apt (cc=0.5924) info on Rv2584c/apt
Rv0642c/mmaA4 (cc=0.5795) info on Rv0642c/mmaA4
Rv0050/ponA1 (cc=0.5774) info on Rv0050/ponA1
Rv0502/- (cc=0.5752) info on Rv0502/-
Rv3218/- (cc=0.5707) info on Rv3218/-
Rv0645c/mmaA1 (cc=0.55) info on Rv0645c/mmaA1
Rv0425c/ctpH (cc=0.5445) info on Rv0425c/ctpH

Correlation of Rv1491c/- with Rv3794/embA

Normalized LFCs for Rv1491c/-:
(description and provenance of datasets)
Rv1491c/-Rv3794/embA
Fe_supp_jason_reseq

-0.737

-0.169

low_pH_jason_reseq

0.482

-0.371

NO_jason_reseq

0.58

0.263

B6_jason_reseq

0.139

-0.119

MHCII_jason_reseq

-0.984

-0.474

Isoniazid02

-0.569

0.469

Rifampicin4

-0.972

-1.465

Ethambutol3

-1.231

-0.824

Meropenem3

-0.927

-0.648

Vancomycin16

-1.685

-1.799

Rv2680_day32

-0.412

-0.131

H37Rv_KO_MarP

-1.242

-0.886

hypoxia_3wks

1.168

1.483

hypoxia_6wks

0.731

0.171

glycerol

0.028

-0.202

cholesterol

0.235

0.132

AJ

0.064

-0.232

Bibs02

-0.203

-0.183

Bibs02c

-0.402

-0.209

BL6

0.82

-0.125

BL6a

0.161

0.499

BXD01

0.408

0.0

BXD010

0.751

0.502

BXD011

1.582

0.222

BXD03

0.219

1.464

BXD04

0.627

0.485

BXD05

0.4

0.436

BXD06

0.452

0.432

BXD07

0.696

0.543

BXD08

0.248

0.121

BXD09

0.719

0.245

CAST

-0.365

0.0

CCcont

0.242

0.0

DS01

-0.534

-0.236

DS02

-0.51

-0.217

DS04

-0.389

-0.194

DS0c

0.19

-0.217

GP01

0.166

0.09

GP02

1.402

-0.083

GP0c

0.4

1.408

NOD

0.031

-0.225

NZO

0.418

-0.199

PWK

-0.901

-0.196

H37Rv_KO_CtpC

0.367

0.41

H37Rv_KO_CtpD

0.742

1.033

H37Rv_KO_Rv1272

-0.06

-0.141

H37Rv_KO_SugABC

0.218

-0.099

H37Rv_KO_MbtN

1.359

0.0

Trans05

0.787

0.0

macrophage_unactivated

-0.376

0.246

IL1

0.611

1.231

Rapamycin

0.516

0.239

Tcell

0.248

0.0

GMCSF

0.018

-0.217

IFNab

0.49

1.605

IFNg

0.056

0.208

IFNg_GMCSF1

0.324

0.245

Rv1432_day32

0.488

0.0

Rv1565c_day32

0.987

0.0

secA2_input

-1.24

-0.47

delta_Rv3594

-0.148

1.205

delta_Rv3717

0.433

0.563

delta_Rv3811

0.009

-0.1

delta_Rv0954

-0.619

-0.481

PonA1

-1.098

-1.313

EccD1_KO

-0.536

0.0

EspI_KO

-0.99

-0.87

PE35_KO

-0.166

-1.415

PPE68_KO

-0.624

-1.254

glycerol2

-0.479

-0.177

lignocerate

0.167

-0.32

oleate

-1.259

-0.179

phosphatidylcholine

-0.268

-0.368

acetate

-0.218

-0.209

glucAc

0.183

-0.272

Rv0950ko

-0.401

-0.262

Rv1096ko

-1.357

-0.546

Rv3684ko

-0.501

-0.917

delta_otsA_trehalose

-0.953

-0.111