Top 10 genes with highest correlation to Rv1404/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3669/- | (cc=0.5149) | info on Rv3669/- |
| Rv1129c/- | (cc=0.5084) | info on Rv1129c/- |
| Rv1130/prpD | (cc=0.5029) | info on Rv1130/prpD |
| Rv0866/moaE2 | (cc=0.4492) | info on Rv0866/moaE2 |
| Rv3553/- | (cc=0.4472) | info on Rv3553/- |
| Rv0154c/fadE2 | (cc=0.4463) | info on Rv0154c/fadE2 |
| Rv2849c/cobO | (cc=0.4452) | info on Rv2849c/cobO |
| Rv0525/- | (cc=0.4388) | info on Rv0525/- |
| Rv2604c/snoP | (cc=0.4329) | info on Rv2604c/snoP |
| Rv1003/- | (cc=0.4247) | info on Rv1003/- |
Correlation of Rv1404/- with Rv3669/-
Normalized LFCs for Rv1404/-:
(description and provenance of datasets)
| Rv1404/- | Rv3669/- | |
| Fe_supp_jason_reseq | 2.382 | 2.087 |
| low_pH_jason_reseq | -1.328 | -0.811 |
| NO_jason_reseq | 0.281 | -1.273 |
| B6_jason_reseq | 1.228 | 1.973 |
| MHCII_jason_reseq | -0.776 | -0.474 |
| Isoniazid02 | 0.332 | 0.21 |
| Rifampicin4 | 0.422 | 0.912 |
| Ethambutol3 | 0.235 | 0.617 |
| Meropenem3 | 0.395 | -0.409 |
| Vancomycin16 | -0.589 | 0.0 |
| Rv2680_day32 | 0.803 | 0.0 |
| H37Rv_KO_MarP | 0.478 | -0.669 |
| hypoxia_3wks | 0.287 | 0.267 |
| hypoxia_6wks | -0.159 | 2.362 |
| glycerol | -1.862 | -1.463 |
| cholesterol | -1.612 | 0.528 |
| AJ | -0.671 | -1.487 |
| Bibs02 | -2.035 | -1.673 |
| Bibs02c | -2.12 | -1.914 |
| BL6 | 0.993 | 0.053 |
| BL6a | 0.0 | -0.088 |
| BXD01 | -0.048 | -0.64 |
| BXD010 | 1.358 | 0.956 |
| BXD011 | 0.968 | 1.714 |
| BXD03 | 1.162 | 0.92 |
| BXD04 | 0.167 | -0.372 |
| BXD05 | -0.209 | 0.682 |
| BXD06 | 1.229 | 1.131 |
| BXD07 | 0.352 | 1.2 |
| BXD08 | 0.729 | -0.4 |
| BXD09 | 1.092 | 1.787 |
| CAST | -1.018 | -0.21 |
| CCcont | 1.732 | 1.049 |
| DS01 | -2.178 | -0.216 |
| DS02 | -0.249 | -0.531 |
| DS04 | -0.753 | -1.775 |
| DS0c | -0.958 | -1.985 |
| GP01 | -1.099 | -0.903 |
| GP02 | -0.926 | -0.761 |
| GP0c | -1.199 | -1.19 |
| NOD | -1.119 | -0.099 |
| NZO | -0.994 | -0.38 |
| PWK | -1.809 | 0.388 |
| H37Rv_KO_CtpC | -1.808 | 2.166 |
| H37Rv_KO_CtpD | -0.787 | -1.159 |
| H37Rv_KO_Rv1272 | -0.972 | -1.29 |
| H37Rv_KO_SugABC | 1.453 | -0.906 |
| H37Rv_KO_MbtN | -0.348 | -0.31 |
| Trans05 | -0.812 | -0.947 |
| macrophage_unactivated | -0.89 | 0.088 |
| IL1 | 0.641 | 2.334 |
| Rapamycin | -0.611 | 0.252 |
| Tcell | 0.433 | 0.0 |
| GMCSF | 0.57 | 1.809 |
| IFNab | 0.889 | 2.228 |
| IFNg | 0.123 | 0.69 |
| IFNg_GMCSF1 | 0.55 | 2.369 |
| Rv1432_day32 | -0.961 | 0.0 |
| Rv1565c_day32 | -0.114 | 0.0 |
| secA2_input | 0.0 | -3.131 |
| delta_Rv3594 | 1.326 | 1.306 |
| delta_Rv3717 | 0.384 | 2.017 |
| delta_Rv3811 | 2.357 | 2.411 |
| delta_Rv0954 | 0.302 | -0.792 |
| PonA1 | 0.503 | 0.986 |
| EccD1_KO | -1.131 | 0.454 |
| EspI_KO | 2.321 | 2.852 |
| PE35_KO | 0.481 | 1.263 |
| PPE68_KO | 0.272 | 0.0 |
| glycerol2 | -0.347 | 0.0 |
| lignocerate | 0.712 | 0.32 |
| oleate | -2.535 | 0.0 |
| phosphatidylcholine | -0.618 | 0.0 |
| acetate | 0.459 | 1.998 |
| glucAc | 0.777 | 1.306 |
| Rv0950ko | 1.683 | -1.372 |
| Rv1096ko | -0.941 | -2.069 |
| Rv3684ko | -0.134 | -0.684 |
| delta_otsA_trehalose | 0.239 | -0.667 |