Top 10 genes with highest correlation to Rv1404/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3669/- | (cc=0.5149) | info on Rv3669/- |
| Rv1129c/- | (cc=0.5084) | info on Rv1129c/- |
| Rv1130/prpD | (cc=0.5029) | info on Rv1130/prpD |
| Rv0866/moaE2 | (cc=0.4492) | info on Rv0866/moaE2 |
| Rv3553/- | (cc=0.4472) | info on Rv3553/- |
| Rv0154c/fadE2 | (cc=0.4463) | info on Rv0154c/fadE2 |
| Rv2849c/cobO | (cc=0.4452) | info on Rv2849c/cobO |
| Rv0525/- | (cc=0.4388) | info on Rv0525/- |
| Rv2604c/snoP | (cc=0.4329) | info on Rv2604c/snoP |
| Rv1003/- | (cc=0.4247) | info on Rv1003/- |
Correlation of Rv1404/- with Rv1130/prpD
Normalized LFCs for Rv1404/-:
(description and provenance of datasets)
| Rv1404/- | Rv1130/prpD | |
| Fe_supp_jason_reseq | 2.382 | -0.554 |
| low_pH_jason_reseq | -1.328 | -2.367 |
| NO_jason_reseq | 0.281 | 0.042 |
| B6_jason_reseq | 1.228 | -2.148 |
| MHCII_jason_reseq | -0.776 | -1.471 |
| Isoniazid02 | 0.332 | 0.147 |
| Rifampicin4 | 0.422 | -0.219 |
| Ethambutol3 | 0.235 | 0.181 |
| Meropenem3 | 0.395 | 0.732 |
| Vancomycin16 | -0.589 | 0.138 |
| Rv2680_day32 | 0.803 | -1.446 |
| H37Rv_KO_MarP | 0.478 | -0.302 |
| hypoxia_3wks | 0.287 | -0.686 |
| hypoxia_6wks | -0.159 | 0.259 |
| glycerol | -1.862 | -0.671 |
| cholesterol | -1.612 | -3.292 |
| AJ | -0.671 | -1.852 |
| Bibs02 | -2.035 | -3.513 |
| Bibs02c | -2.12 | -3.471 |
| BL6 | 0.993 | 0.876 |
| BL6a | 0.0 | -1.171 |
| BXD01 | -0.048 | 0.075 |
| BXD010 | 1.358 | 0.237 |
| BXD011 | 0.968 | 0.272 |
| BXD03 | 1.162 | -0.17 |
| BXD04 | 0.167 | -0.06 |
| BXD05 | -0.209 | -0.207 |
| BXD06 | 1.229 | 0.106 |
| BXD07 | 0.352 | 0.2 |
| BXD08 | 0.729 | 0.646 |
| BXD09 | 1.092 | -0.051 |
| CAST | -1.018 | -1.562 |
| CCcont | 1.732 | 0.873 |
| DS01 | -2.178 | -3.537 |
| DS02 | -0.249 | -3.608 |
| DS04 | -0.753 | -1.452 |
| DS0c | -0.958 | -2.596 |
| GP01 | -1.099 | -1.529 |
| GP02 | -0.926 | -0.583 |
| GP0c | -1.199 | -0.096 |
| NOD | -1.119 | -0.054 |
| NZO | -0.994 | -1.982 |
| PWK | -1.809 | -2.011 |
| H37Rv_KO_CtpC | -1.808 | -0.798 |
| H37Rv_KO_CtpD | -0.787 | -0.381 |
| H37Rv_KO_Rv1272 | -0.972 | 0.62 |
| H37Rv_KO_SugABC | 1.453 | -0.024 |
| H37Rv_KO_MbtN | -0.348 | -0.413 |
| Trans05 | -0.812 | 0.241 |
| macrophage_unactivated | -0.89 | -0.997 |
| IL1 | 0.641 | -3.625 |
| Rapamycin | -0.611 | -3.228 |
| Tcell | 0.433 | -2.209 |
| GMCSF | 0.57 | 0.739 |
| IFNab | 0.889 | 1.608 |
| IFNg | 0.123 | -0.139 |
| IFNg_GMCSF1 | 0.55 | 1.012 |
| Rv1432_day32 | -0.961 | -0.19 |
| Rv1565c_day32 | -0.114 | -0.261 |
| secA2_input | 0.0 | -1.005 |
| delta_Rv3594 | 1.326 | 0.347 |
| delta_Rv3717 | 0.384 | 0.428 |
| delta_Rv3811 | 2.357 | 0.47 |
| delta_Rv0954 | 0.302 | 0.884 |
| PonA1 | 0.503 | 0.152 |
| EccD1_KO | -1.131 | 1.145 |
| EspI_KO | 2.321 | 0.359 |
| PE35_KO | 0.481 | 0.971 |
| PPE68_KO | 0.272 | 0.921 |
| glycerol2 | -0.347 | -0.363 |
| lignocerate | 0.712 | -0.514 |
| oleate | -2.535 | -1.27 |
| phosphatidylcholine | -0.618 | -0.717 |
| acetate | 0.459 | 1.232 |
| glucAc | 0.777 | 1.099 |
| Rv0950ko | 1.683 | 0.476 |
| Rv1096ko | -0.941 | 0.265 |
| Rv3684ko | -0.134 | -0.203 |
| delta_otsA_trehalose | 0.239 | 0.846 |