Top 10 genes with highest correlation to Rv1404/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3669/- | (cc=0.5149) | info on Rv3669/- |
| Rv1129c/- | (cc=0.5084) | info on Rv1129c/- |
| Rv1130/prpD | (cc=0.5029) | info on Rv1130/prpD |
| Rv0866/moaE2 | (cc=0.4492) | info on Rv0866/moaE2 |
| Rv3553/- | (cc=0.4472) | info on Rv3553/- |
| Rv0154c/fadE2 | (cc=0.4463) | info on Rv0154c/fadE2 |
| Rv2849c/cobO | (cc=0.4452) | info on Rv2849c/cobO |
| Rv0525/- | (cc=0.4388) | info on Rv0525/- |
| Rv2604c/snoP | (cc=0.4329) | info on Rv2604c/snoP |
| Rv1003/- | (cc=0.4247) | info on Rv1003/- |
Correlation of Rv1404/- with Rv2849c/cobO
Normalized LFCs for Rv1404/-:
(description and provenance of datasets)
| Rv1404/- | Rv2849c/cobO | |
| Fe_supp_jason_reseq | 2.382 | 0.496 |
| low_pH_jason_reseq | -1.328 | 0.666 |
| NO_jason_reseq | 0.281 | 0.559 |
| B6_jason_reseq | 1.228 | -0.613 |
| MHCII_jason_reseq | -0.776 | -0.393 |
| Isoniazid02 | 0.332 | 0.588 |
| Rifampicin4 | 0.422 | 0.636 |
| Ethambutol3 | 0.235 | -0.097 |
| Meropenem3 | 0.395 | 0.189 |
| Vancomycin16 | -0.589 | 0.982 |
| Rv2680_day32 | 0.803 | -1.007 |
| H37Rv_KO_MarP | 0.478 | 0.182 |
| hypoxia_3wks | 0.287 | 0.279 |
| hypoxia_6wks | -0.159 | -1.251 |
| glycerol | -1.862 | -0.459 |
| cholesterol | -1.612 | -0.503 |
| AJ | -0.671 | -0.698 |
| Bibs02 | -2.035 | -0.578 |
| Bibs02c | -2.12 | -1.085 |
| BL6 | 0.993 | 0.391 |
| BL6a | 0.0 | -0.023 |
| BXD01 | -0.048 | -0.092 |
| BXD010 | 1.358 | 1.328 |
| BXD011 | 0.968 | 0.886 |
| BXD03 | 1.162 | 1.947 |
| BXD04 | 0.167 | -0.057 |
| BXD05 | -0.209 | 1.372 |
| BXD06 | 1.229 | 1.034 |
| BXD07 | 0.352 | 0.443 |
| BXD08 | 0.729 | 0.752 |
| BXD09 | 1.092 | 1.233 |
| CAST | -1.018 | -0.799 |
| CCcont | 1.732 | -0.238 |
| DS01 | -2.178 | 0.053 |
| DS02 | -0.249 | -0.654 |
| DS04 | -0.753 | -0.8 |
| DS0c | -0.958 | -0.894 |
| GP01 | -1.099 | -0.672 |
| GP02 | -0.926 | -0.792 |
| GP0c | -1.199 | -0.091 |
| NOD | -1.119 | -2.792 |
| NZO | -0.994 | -2.407 |
| PWK | -1.809 | -0.843 |
| H37Rv_KO_CtpC | -1.808 | 1.092 |
| H37Rv_KO_CtpD | -0.787 | -1.725 |
| H37Rv_KO_Rv1272 | -0.972 | 0.236 |
| H37Rv_KO_SugABC | 1.453 | 0.374 |
| H37Rv_KO_MbtN | -0.348 | 0.122 |
| Trans05 | -0.812 | -0.833 |
| macrophage_unactivated | -0.89 | -0.085 |
| IL1 | 0.641 | 0.454 |
| Rapamycin | -0.611 | 1.218 |
| Tcell | 0.433 | -0.059 |
| GMCSF | 0.57 | 1.824 |
| IFNab | 0.889 | -0.193 |
| IFNg | 0.123 | 1.221 |
| IFNg_GMCSF1 | 0.55 | 1.753 |
| Rv1432_day32 | -0.961 | -0.961 |
| Rv1565c_day32 | -0.114 | -2.96 |
| secA2_input | 0.0 | 0.784 |
| delta_Rv3594 | 1.326 | 0.597 |
| delta_Rv3717 | 0.384 | 0.756 |
| delta_Rv3811 | 2.357 | 0.097 |
| delta_Rv0954 | 0.302 | 0.978 |
| PonA1 | 0.503 | -1.098 |
| EccD1_KO | -1.131 | -0.569 |
| EspI_KO | 2.321 | 1.255 |
| PE35_KO | 0.481 | 1.003 |
| PPE68_KO | 0.272 | 0.234 |
| glycerol2 | -0.347 | -2.14 |
| lignocerate | 0.712 | -0.669 |
| oleate | -2.535 | -2.355 |
| phosphatidylcholine | -0.618 | -0.738 |
| acetate | 0.459 | -0.642 |
| glucAc | 0.777 | 1.965 |
| Rv0950ko | 1.683 | 0.28 |
| Rv1096ko | -0.941 | 0.914 |
| Rv3684ko | -0.134 | 0.118 |
| delta_otsA_trehalose | 0.239 | -0.197 |