Top 10 genes with highest correlation to Rv1404/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3669/- | (cc=0.5149) | info on Rv3669/- |
| Rv1129c/- | (cc=0.5084) | info on Rv1129c/- |
| Rv1130/prpD | (cc=0.5029) | info on Rv1130/prpD |
| Rv0866/moaE2 | (cc=0.4492) | info on Rv0866/moaE2 |
| Rv3553/- | (cc=0.4472) | info on Rv3553/- |
| Rv0154c/fadE2 | (cc=0.4463) | info on Rv0154c/fadE2 |
| Rv2849c/cobO | (cc=0.4452) | info on Rv2849c/cobO |
| Rv0525/- | (cc=0.4388) | info on Rv0525/- |
| Rv2604c/snoP | (cc=0.4329) | info on Rv2604c/snoP |
| Rv1003/- | (cc=0.4247) | info on Rv1003/- |
Correlation of Rv1404/- with Rv1003/-
Normalized LFCs for Rv1404/-:
(description and provenance of datasets)
| Rv1404/- | Rv1003/- | |
| Fe_supp_jason_reseq | 2.382 | 0.526 |
| low_pH_jason_reseq | -1.328 | -0.848 |
| NO_jason_reseq | 0.281 | 0.137 |
| B6_jason_reseq | 1.228 | 0.37 |
| MHCII_jason_reseq | -0.776 | -0.738 |
| Isoniazid02 | 0.332 | 1.125 |
| Rifampicin4 | 0.422 | 1.053 |
| Ethambutol3 | 0.235 | 0.347 |
| Meropenem3 | 0.395 | -0.235 |
| Vancomycin16 | -0.589 | 0.639 |
| Rv2680_day32 | 0.803 | -0.522 |
| H37Rv_KO_MarP | 0.478 | -0.844 |
| hypoxia_3wks | 0.287 | -0.379 |
| hypoxia_6wks | -0.159 | 0.125 |
| glycerol | -1.862 | -0.075 |
| cholesterol | -1.612 | 1.517 |
| AJ | -0.671 | -1.598 |
| Bibs02 | -2.035 | 0.963 |
| Bibs02c | -2.12 | -0.156 |
| BL6 | 0.993 | 0.545 |
| BL6a | 0.0 | 0.138 |
| BXD01 | -0.048 | 0.658 |
| BXD010 | 1.358 | 1.844 |
| BXD011 | 0.968 | 0.211 |
| BXD03 | 1.162 | 0.418 |
| BXD04 | 0.167 | 1.42 |
| BXD05 | -0.209 | 0.181 |
| BXD06 | 1.229 | 0.483 |
| BXD07 | 0.352 | 0.313 |
| BXD08 | 0.729 | 1.245 |
| BXD09 | 1.092 | 0.435 |
| CAST | -1.018 | -0.085 |
| CCcont | 1.732 | 0.754 |
| DS01 | -2.178 | -1.177 |
| DS02 | -0.249 | -0.337 |
| DS04 | -0.753 | -1.477 |
| DS0c | -0.958 | -0.958 |
| GP01 | -1.099 | -1.001 |
| GP02 | -0.926 | -0.767 |
| GP0c | -1.199 | -0.896 |
| NOD | -1.119 | -0.348 |
| NZO | -0.994 | -1.24 |
| PWK | -1.809 | 0.136 |
| H37Rv_KO_CtpC | -1.808 | 0.502 |
| H37Rv_KO_CtpD | -0.787 | -0.964 |
| H37Rv_KO_Rv1272 | -0.972 | 0.234 |
| H37Rv_KO_SugABC | 1.453 | 1.715 |
| H37Rv_KO_MbtN | -0.348 | 1.826 |
| Trans05 | -0.812 | -1.454 |
| macrophage_unactivated | -0.89 | 0.0 |
| IL1 | 0.641 | -0.409 |
| Rapamycin | -0.611 | -0.135 |
| Tcell | 0.433 | 0.411 |
| GMCSF | 0.57 | 0.919 |
| IFNab | 0.889 | 0.946 |
| IFNg | 0.123 | 1.021 |
| IFNg_GMCSF1 | 0.55 | 1.093 |
| Rv1432_day32 | -0.961 | -0.278 |
| Rv1565c_day32 | -0.114 | -0.415 |
| secA2_input | 0.0 | -0.255 |
| delta_Rv3594 | 1.326 | 2.302 |
| delta_Rv3717 | 0.384 | 1.749 |
| delta_Rv3811 | 2.357 | 2.414 |
| delta_Rv0954 | 0.302 | 0.561 |
| PonA1 | 0.503 | 2.364 |
| EccD1_KO | -1.131 | 1.286 |
| EspI_KO | 2.321 | 1.449 |
| PE35_KO | 0.481 | -0.712 |
| PPE68_KO | 0.272 | -0.102 |
| glycerol2 | -0.347 | -2.044 |
| lignocerate | 0.712 | -1.316 |
| oleate | -2.535 | -1.533 |
| phosphatidylcholine | -0.618 | -1.293 |
| acetate | 0.459 | -0.229 |
| glucAc | 0.777 | -0.717 |
| Rv0950ko | 1.683 | -0.823 |
| Rv1096ko | -0.941 | -0.392 |
| Rv3684ko | -0.134 | -1.877 |
| delta_otsA_trehalose | 0.239 | -0.105 |