Top 10 genes with highest correlation to Rv1379/pyrR:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0455c/- | (cc=0.6323) | info on Rv0455c/- |
| Rv3274c/fadE25 | (cc=0.6037) | info on Rv3274c/fadE25 |
| Rv2928/tesA | (cc=0.5819) | info on Rv2928/tesA |
| Rv2941/fadD28 | (cc=0.5386) | info on Rv2941/fadD28 |
| Rv2932/ppsB | (cc=0.5202) | info on Rv2932/ppsB |
| Rv2935/ppsE | (cc=0.518) | info on Rv2935/ppsE |
| Rv2931/ppsA | (cc=0.5014) | info on Rv2931/ppsA |
| Rv2933/ppsC | (cc=0.4973) | info on Rv2933/ppsC |
| Rv1286/cysN | (cc=0.494) | info on Rv1286/cysN |
| Rv2934/ppsD | (cc=0.4882) | info on Rv2934/ppsD |
Correlation of Rv1379/pyrR with Rv2931/ppsA
Normalized LFCs for Rv1379/pyrR:
(description and provenance of datasets)
| Rv1379/pyrR | Rv2931/ppsA | |
| Fe_supp_jason_reseq | 1.778 | 2.073 |
| low_pH_jason_reseq | -0.231 | 2.476 |
| NO_jason_reseq | 0.331 | -0.441 |
| B6_jason_reseq | 0.386 | 1.807 |
| MHCII_jason_reseq | -0.135 | -2.823 |
| Isoniazid02 | 0.0 | 0.295 |
| Rifampicin4 | 0.0 | 0.888 |
| Ethambutol3 | 0.0 | 0.116 |
| Meropenem3 | -0.315 | 0.49 |
| Vancomycin16 | 0.305 | -0.122 |
| Rv2680_day32 | -0.359 | -2.214 |
| H37Rv_KO_MarP | 1.637 | -0.559 |
| hypoxia_3wks | -0.55 | 0.985 |
| hypoxia_6wks | 1.311 | -0.171 |
| glycerol | 0.686 | 3.229 |
| cholesterol | 0.112 | 2.197 |
| AJ | -0.637 | 0.304 |
| Bibs02 | -0.502 | -3.444 |
| Bibs02c | -0.574 | -3.146 |
| BL6 | -0.343 | 0.604 |
| BL6a | -0.544 | -0.994 |
| BXD01 | 1.045 | 1.763 |
| BXD010 | -0.352 | 0.318 |
| BXD011 | -0.35 | -0.042 |
| BXD03 | -0.113 | -0.044 |
| BXD04 | 0.269 | 1.017 |
| BXD05 | -0.235 | -0.96 |
| BXD06 | 0.199 | 0.213 |
| BXD07 | 0.107 | 0.367 |
| BXD08 | 0.103 | 1.493 |
| BXD09 | -0.245 | -0.321 |
| CAST | -0.402 | 2.346 |
| CCcont | -0.41 | 1.122 |
| DS01 | -0.648 | 0.287 |
| DS02 | -0.597 | 0.833 |
| DS04 | -0.533 | 0.142 |
| DS0c | -0.596 | -0.553 |
| GP01 | -0.271 | -2.345 |
| GP02 | -0.145 | -1.976 |
| GP0c | -0.357 | -3.087 |
| NOD | -0.617 | 1.687 |
| NZO | -0.548 | 2.15 |
| PWK | -0.539 | -0.131 |
| H37Rv_KO_CtpC | -0.446 | -1.304 |
| H37Rv_KO_CtpD | -0.348 | -0.851 |
| H37Rv_KO_Rv1272 | -0.387 | -0.977 |
| H37Rv_KO_SugABC | -0.272 | 0.64 |
| H37Rv_KO_MbtN | -0.283 | -0.235 |
| Trans05 | -0.359 | -1.079 |
| macrophage_unactivated | 0.0 | 4.056 |
| IL1 | 0.0 | -2.462 |
| Rapamycin | 0.0 | -2.308 |
| Tcell | 0.857 | 4.005 |
| GMCSF | 0.0 | -2.886 |
| IFNab | 0.0 | -2.273 |
| IFNg | 0.0 | -3.782 |
| IFNg_GMCSF1 | 0.434 | -1.304 |
| Rv1432_day32 | 0.0 | 0.763 |
| Rv1565c_day32 | 0.0 | -0.199 |
| secA2_input | -0.528 | -0.639 |
| delta_Rv3594 | -1.597 | -2.489 |
| delta_Rv3717 | -1.691 | -2.245 |
| delta_Rv3811 | -2.561 | -2.211 |
| delta_Rv0954 | -1.737 | -1.053 |
| PonA1 | 0.19 | -1.29 |
| EccD1_KO | -1.013 | -3.595 |
| EspI_KO | -1.996 | -1.934 |
| PE35_KO | 0.601 | 1.96 |
| PPE68_KO | -0.566 | 0.141 |
| glycerol2 | -0.347 | 0.954 |
| lignocerate | -0.302 | 0.655 |
| oleate | 0.0 | 1.185 |
| phosphatidylcholine | -0.347 | 1.076 |
| acetate | -0.13 | -0.421 |
| glucAc | -0.957 | -0.462 |
| Rv0950ko | -1.601 | -3.757 |
| Rv1096ko | -2.395 | -5.398 |
| Rv3684ko | -2.292 | -3.449 |
| delta_otsA_trehalose | 0.667 | 0.356 |