TnSeqCorr

Top 10 genes with highest correlation to Rv1314c/-:

update plotcorrelationlink to info on gene
Rv1493/mutB (cc=0.7811) info on Rv1493/mutB
Rv1492/mutA (cc=0.7008) info on Rv1492/mutA
Rv0256c/PPE2 (cc=0.6909) info on Rv0256c/PPE2
Rv3551/- (cc=0.6908) info on Rv3551/-
Rv1819c/bacA (cc=0.6889) info on Rv1819c/bacA
Rv3614c/espD (cc=0.687) info on Rv3614c/espD
Rv1589/bioB (cc=0.6806) info on Rv1589/bioB
Rv2604c/snoP (cc=0.6787) info on Rv2604c/snoP
Rv2498c/citE (cc=0.6736) info on Rv2498c/citE
Rv3616c/espA (cc=0.6725) info on Rv3616c/espA

Correlation of Rv1314c/- with Rv1819c/bacA

Normalized LFCs for Rv1314c/-:
(description and provenance of datasets)
Rv1314c/-Rv1819c/bacA
Fe_supp_jason_reseq

0.893

-0.232

low_pH_jason_reseq

-0.714

-0.644

NO_jason_reseq

-1.46

-0.961

B6_jason_reseq

-2.233

-2.711

MHCII_jason_reseq

-0.72

-0.292

Isoniazid02

-0.22

-0.583

Rifampicin4

-0.409

-1.213

Ethambutol3

0.013

0.276

Meropenem3

0.722

-0.573

Vancomycin16

0.0

-0.822

Rv2680_day32

-0.375

-0.038

H37Rv_KO_MarP

1.202

0.219

hypoxia_3wks

-0.347

-0.801

hypoxia_6wks

-1.453

-1.831

glycerol

0.048

0.099

cholesterol

0.371

0.205

AJ

-3.027

-1.464

Bibs02

-1.379

-0.842

Bibs02c

-2.092

-0.588

BL6

-0.931

-1.221

BL6a

-1.766

-0.865

BXD01

-0.426

-0.844

BXD010

-0.543

-1.201

BXD011

-0.512

-0.746

BXD03

-1.146

-1.376

BXD04

-0.907

-0.638

BXD05

-0.962

-1.303

BXD06

-0.73

-1.262

BXD07

-1.003

-0.947

BXD08

-0.409

-0.728

BXD09

-0.875

-0.927

CAST

-2.891

-1.493

CCcont

0.277

-0.401

DS01

-1.851

-0.909

DS02

-3.723

-2.384

DS04

-1.226

-1.28

DS0c

-0.781

-0.815

GP01

-0.132

0.049

GP02

-0.371

-1.644

GP0c

-0.468

-1.219

NOD

-1.832

-0.696

NZO

-2.045

-0.958

PWK

-1.961

-1.204

H37Rv_KO_CtpC

-1.644

-0.207

H37Rv_KO_CtpD

-0.942

-0.113

H37Rv_KO_Rv1272

-1.427

0.004

H37Rv_KO_SugABC

-0.652

-0.827

H37Rv_KO_MbtN

-1.79

-1.571

Trans05

-1.661

-0.148

macrophage_unactivated

1.916

-0.199

IL1

0.0

-0.11

Rapamycin

0.083

0.166

Tcell

1.965

0.31

GMCSF

-0.356

-0.116

IFNab

0.299

-0.707

IFNg

0.331

0.115

IFNg_GMCSF1

-0.198

0.207

Rv1432_day32

0.834

1.109

Rv1565c_day32

-1.478

-0.27

secA2_input

-0.013

-0.681

delta_Rv3594

-0.136

-0.026

delta_Rv3717

0.646

-0.383

delta_Rv3811

1.087

-0.034

delta_Rv0954

-0.37

0.163

PonA1

-0.33

0.569

EccD1_KO

1.569

0.332

EspI_KO

1.62

0.998

PE35_KO

1.219

0.461

PPE68_KO

1.616

0.445

glycerol2

0.474

0.36

lignocerate

0.177

-0.207

oleate

0.357

-0.315

phosphatidylcholine

0.525

1.071

acetate

-0.11

-0.091

glucAc

-0.174

0.141

Rv0950ko

-0.567

-0.57

Rv1096ko

-0.332

-1.164

Rv3684ko

0.0

-0.894

delta_otsA_trehalose

-0.198

-0.31