Top 10 genes with highest correlation to Rv1235/lpqY:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1236/sugA | (cc=0.7991) | info on Rv1236/sugA |
| Rv1238/sugC | (cc=0.7937) | info on Rv1238/sugC |
| Rv1405c/- | (cc=0.7893) | info on Rv1405c/- |
| Rv3868/eccA1 | (cc=0.7865) | info on Rv3868/eccA1 |
| Rv3871/eccCb1 | (cc=0.764) | info on Rv3871/eccCb1 |
| Rv1568/bioA | (cc=0.7631) | info on Rv1568/bioA |
| Rv3882c/eccE1 | (cc=0.7606) | info on Rv3882c/eccE1 |
| Rv3616c/espA | (cc=0.7594) | info on Rv3616c/espA |
| Rv3870/eccCa1 | (cc=0.7525) | info on Rv3870/eccCa1 |
| Rv1589/bioB | (cc=0.7507) | info on Rv1589/bioB |
Correlation of Rv1235/lpqY with Rv1589/bioB
Normalized LFCs for Rv1235/lpqY:
(description and provenance of datasets)
| Rv1235/lpqY | Rv1589/bioB | |
| Fe_supp_jason_reseq | -0.923 | 0.849 |
| low_pH_jason_reseq | -0.507 | -1.268 |
| NO_jason_reseq | -0.034 | 0.223 |
| B6_jason_reseq | -1.41 | -3.371 |
| MHCII_jason_reseq | -2.564 | -2.397 |
| Isoniazid02 | -1.036 | -1.656 |
| Rifampicin4 | 0.609 | 0.198 |
| Ethambutol3 | 0.051 | -0.174 |
| Meropenem3 | -1.357 | 1.255 |
| Vancomycin16 | 0.164 | -0.138 |
| Rv2680_day32 | -2.577 | -4.017 |
| H37Rv_KO_MarP | 0.835 | -0.392 |
| hypoxia_3wks | 0.471 | 0.227 |
| hypoxia_6wks | 0.716 | -0.42 |
| glycerol | -0.418 | -6.0 |
| cholesterol | -0.035 | -4.449 |
| AJ | -2.262 | -6.0 |
| Bibs02 | -1.576 | -5.616 |
| Bibs02c | -1.175 | -6.0 |
| BL6 | -1.827 | -3.718 |
| BL6a | -1.458 | -5.111 |
| BXD01 | -1.842 | -4.001 |
| BXD010 | -1.369 | -3.934 |
| BXD011 | -1.801 | -3.206 |
| BXD03 | -2.182 | -3.58 |
| BXD04 | -0.292 | -1.441 |
| BXD05 | -2.172 | -3.159 |
| BXD06 | -1.664 | -4.1 |
| BXD07 | -1.392 | -4.253 |
| BXD08 | -1.658 | -3.832 |
| BXD09 | -1.647 | -4.316 |
| CAST | -3.717 | -5.943 |
| CCcont | -0.331 | -0.025 |
| DS01 | -1.576 | -6.0 |
| DS02 | -1.994 | -6.0 |
| DS04 | -2.927 | -3.872 |
| DS0c | -1.648 | -6.0 |
| GP01 | -1.089 | -2.317 |
| GP02 | -1.39 | -1.832 |
| GP0c | 0.015 | 0.733 |
| NOD | -3.389 | -5.519 |
| NZO | -2.006 | -5.929 |
| PWK | -3.277 | -5.83 |
| H37Rv_KO_CtpC | -1.048 | -4.192 |
| H37Rv_KO_CtpD | -0.5 | -2.195 |
| H37Rv_KO_Rv1272 | -1.653 | -2.444 |
| H37Rv_KO_SugABC | -0.661 | -2.014 |
| H37Rv_KO_MbtN | -0.128 | -0.331 |
| Trans05 | 0.089 | -3.554 |
| macrophage_unactivated | 0.0 | 2.333 |
| IL1 | 1.1 | 0.181 |
| Rapamycin | 0.997 | -0.319 |
| Tcell | -0.244 | 1.492 |
| GMCSF | 0.826 | 1.706 |
| IFNab | 0.692 | 3.099 |
| IFNg | 0.577 | 0.353 |
| IFNg_GMCSF1 | 0.396 | -0.773 |
| Rv1432_day32 | -2.173 | -4.133 |
| Rv1565c_day32 | -1.989 | -4.498 |
| secA2_input | -0.601 | 0.099 |
| delta_Rv3594 | 0.083 | -0.112 |
| delta_Rv3717 | -0.701 | 0.152 |
| delta_Rv3811 | -0.232 | 0.345 |
| delta_Rv0954 | -0.459 | 0.181 |
| PonA1 | -0.111 | -0.118 |
| EccD1_KO | -0.27 | -0.257 |
| EspI_KO | -0.057 | -0.305 |
| PE35_KO | -0.178 | -0.414 |
| PPE68_KO | -0.474 | 0.07 |
| glycerol2 | -0.383 | 0.0 |
| lignocerate | -0.459 | 0.168 |
| oleate | 0.244 | 0.0 |
| phosphatidylcholine | 0.0 | 0.0 |
| acetate | -0.231 | 0.63 |
| glucAc | -0.412 | 0.392 |
| Rv0950ko | 0.329 | -0.434 |
| Rv1096ko | 0.63 | -0.112 |
| Rv3684ko | 0.874 | -0.868 |
| delta_otsA_trehalose | 0.0 | 1.462 |