TnSeqCorr

Top 10 genes with highest correlation to Rv1234/-:

update plotcorrelationlink to info on gene
Rv0983/pepD (cc=0.5123) info on Rv0983/pepD
Rv3569c/hsaD (cc=0.511) info on Rv3569c/hsaD
Rv1235/lpqY (cc=0.5003) info on Rv1235/lpqY
Rv0099/fadD10 (cc=0.4945) info on Rv0099/fadD10
Rv3560c/fadE30 (cc=0.4889) info on Rv3560c/fadE30
Rv2498c/citE (cc=0.4822) info on Rv2498c/citE
Rv3543c/fadE29 (cc=0.4814) info on Rv3543c/fadE29
Rv0204c/- (cc=0.474) info on Rv0204c/-
Rv2734/- (cc=0.4704) info on Rv2734/-
Rv1417/- (cc=0.4675) info on Rv1417/-

Correlation of Rv1234/- with Rv2734/-

Normalized LFCs for Rv1234/-:
(description and provenance of datasets)
Rv1234/-Rv2734/-
Fe_supp_jason_reseq

-0.83

1.563

low_pH_jason_reseq

0.085

0.157

NO_jason_reseq

0.425

0.906

B6_jason_reseq

-1.557

-0.363

MHCII_jason_reseq

-1.173

-1.422

Isoniazid02

-1.133

1.097

Rifampicin4

-0.615

-0.948

Ethambutol3

0.134

0.79

Meropenem3

-1.329

1.155

Vancomycin16

-1.143

-0.48

Rv2680_day32

-0.117

-0.068

H37Rv_KO_MarP

0.488

-0.305

hypoxia_3wks

-1.878

-0.849

hypoxia_6wks

-1.349

-1.201

glycerol

-0.288

0.534

cholesterol

1.031

0.588

AJ

-1.98

-1.807

Bibs02

0.522

-0.791

Bibs02c

-2.884

-1.479

BL6

-1.376

-0.14

BL6a

-0.926

0.168

BXD01

-0.15

0.153

BXD010

-0.726

1.157

BXD011

0.433

0.742

BXD03

-1.746

0.115

BXD04

0.22

0.0

BXD05

-0.017

0.609

BXD06

-0.843

0.278

BXD07

0.969

0.862

BXD08

0.196

-0.23

BXD09

0.083

0.41

CAST

-0.394

-1.326

CCcont

-0.132

0.711

DS01

-1.769

-0.724

DS02

-0.468

-1.06

DS04

-1.06

-0.594

DS0c

-1.912

0.22

GP01

0.79

0.595

GP02

-0.833

-0.061

GP0c

0.801

0.633

NOD

-1.796

-1.364

NZO

-0.894

-1.276

PWK

-1.729

-0.601

H37Rv_KO_CtpC

1.033

-0.747

H37Rv_KO_CtpD

-0.949

1.199

H37Rv_KO_Rv1272

0.643

0.918

H37Rv_KO_SugABC

1.74

0.872

H37Rv_KO_MbtN

-0.938

0.662

Trans05

1.537

0.416

macrophage_unactivated

0.492

0.407

IL1

1.934

0.383

Rapamycin

1.725

0.058

Tcell

-0.42

0.244

GMCSF

2.339

-0.05

IFNab

1.097

1.787

IFNg

3.375

0.66

IFNg_GMCSF1

2.853

0.569

Rv1432_day32

-2.515

-0.87

Rv1565c_day32

-2.132

-1.693

secA2_input

1.057

0.142

delta_Rv3594

0.052

-0.08

delta_Rv3717

0.147

-0.357

delta_Rv3811

-0.134

-0.7

delta_Rv0954

1.39

-0.319

PonA1

0.343

-0.611

EccD1_KO

1.289

0.138

EspI_KO

1.283

0.091

PE35_KO

0.551

-0.26

PPE68_KO

0.899

0.0

glycerol2

-1.974

-1.841

lignocerate

-1.735

-1.93

oleate

-0.332

-1.589

phosphatidylcholine

-0.98

-2.364

acetate

-1.102

-1.014

glucAc

-2.014

-0.482

Rv0950ko

0.908

-0.081

Rv1096ko

0.371

-0.311

Rv3684ko

1.831

0.452

delta_otsA_trehalose

-0.058

1.091