Top 10 genes with highest correlation to Rv1234/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0983/pepD | (cc=0.5123) | info on Rv0983/pepD |
| Rv3569c/hsaD | (cc=0.511) | info on Rv3569c/hsaD |
| Rv1235/lpqY | (cc=0.5003) | info on Rv1235/lpqY |
| Rv0099/fadD10 | (cc=0.4945) | info on Rv0099/fadD10 |
| Rv3560c/fadE30 | (cc=0.4889) | info on Rv3560c/fadE30 |
| Rv2498c/citE | (cc=0.4822) | info on Rv2498c/citE |
| Rv3543c/fadE29 | (cc=0.4814) | info on Rv3543c/fadE29 |
| Rv0204c/- | (cc=0.474) | info on Rv0204c/- |
| Rv2734/- | (cc=0.4704) | info on Rv2734/- |
| Rv1417/- | (cc=0.4675) | info on Rv1417/- |
Correlation of Rv1234/- with Rv1417/-
Normalized LFCs for Rv1234/-:
(description and provenance of datasets)
| Rv1234/- | Rv1417/- | |
| Fe_supp_jason_reseq | -0.83 | -0.09 |
| low_pH_jason_reseq | 0.085 | 1.039 |
| NO_jason_reseq | 0.425 | 1.817 |
| B6_jason_reseq | -1.557 | -1.53 |
| MHCII_jason_reseq | -1.173 | -0.776 |
| Isoniazid02 | -1.133 | 0.188 |
| Rifampicin4 | -0.615 | -1.465 |
| Ethambutol3 | 0.134 | -0.505 |
| Meropenem3 | -1.329 | -0.231 |
| Vancomycin16 | -1.143 | -0.122 |
| Rv2680_day32 | -0.117 | -2.415 |
| H37Rv_KO_MarP | 0.488 | 0.611 |
| hypoxia_3wks | -1.878 | 0.0 |
| hypoxia_6wks | -1.349 | -0.791 |
| glycerol | -0.288 | 1.685 |
| cholesterol | 1.031 | -0.792 |
| AJ | -1.98 | -1.269 |
| Bibs02 | 0.522 | -0.775 |
| Bibs02c | -2.884 | -1.773 |
| BL6 | -1.376 | 0.577 |
| BL6a | -0.926 | -0.331 |
| BXD01 | -0.15 | 0.783 |
| BXD010 | -0.726 | 0.048 |
| BXD011 | 0.433 | 0.455 |
| BXD03 | -1.746 | -0.356 |
| BXD04 | 0.22 | -0.676 |
| BXD05 | -0.017 | -0.053 |
| BXD06 | -0.843 | 1.042 |
| BXD07 | 0.969 | 1.774 |
| BXD08 | 0.196 | -0.107 |
| BXD09 | 0.083 | -0.113 |
| CAST | -0.394 | -1.415 |
| CCcont | -0.132 | 0.449 |
| DS01 | -1.769 | -1.141 |
| DS02 | -0.468 | -1.843 |
| DS04 | -1.06 | -0.822 |
| DS0c | -1.912 | -1.838 |
| GP01 | 0.79 | 1.054 |
| GP02 | -0.833 | 0.79 |
| GP0c | 0.801 | 2.615 |
| NOD | -1.796 | -1.085 |
| NZO | -0.894 | -1.091 |
| PWK | -1.729 | -0.831 |
| H37Rv_KO_CtpC | 1.033 | -1.116 |
| H37Rv_KO_CtpD | -0.949 | 1.387 |
| H37Rv_KO_Rv1272 | 0.643 | 0.966 |
| H37Rv_KO_SugABC | 1.74 | 2.014 |
| H37Rv_KO_MbtN | -0.938 | -0.127 |
| Trans05 | 1.537 | -0.554 |
| macrophage_unactivated | 0.492 | -0.338 |
| IL1 | 1.934 | 0.0 |
| Rapamycin | 1.725 | 0.307 |
| Tcell | -0.42 | -0.349 |
| GMCSF | 2.339 | 2.709 |
| IFNab | 1.097 | 1.445 |
| IFNg | 3.375 | 0.748 |
| IFNg_GMCSF1 | 2.853 | 2.63 |
| Rv1432_day32 | -2.515 | 0.0 |
| Rv1565c_day32 | -2.132 | -0.766 |
| secA2_input | 1.057 | -1.118 |
| delta_Rv3594 | 0.052 | -0.73 |
| delta_Rv3717 | 0.147 | -2.046 |
| delta_Rv3811 | -0.134 | -2.513 |
| delta_Rv0954 | 1.39 | -0.136 |
| PonA1 | 0.343 | -0.584 |
| EccD1_KO | 1.289 | -0.651 |
| EspI_KO | 1.283 | 0.305 |
| PE35_KO | 0.551 | 1.129 |
| PPE68_KO | 0.899 | -0.912 |
| glycerol2 | -1.974 | -1.77 |
| lignocerate | -1.735 | -0.947 |
| oleate | -0.332 | -1.103 |
| phosphatidylcholine | -0.98 | -0.95 |
| acetate | -1.102 | -0.155 |
| glucAc | -2.014 | -0.389 |
| Rv0950ko | 0.908 | 1.827 |
| Rv1096ko | 0.371 | 0.697 |
| Rv3684ko | 1.831 | 0.102 |
| delta_otsA_trehalose | -0.058 | 0.818 |