Top 10 genes with highest correlation to Rv1234/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0983/pepD | (cc=0.5123) | info on Rv0983/pepD |
| Rv3569c/hsaD | (cc=0.511) | info on Rv3569c/hsaD |
| Rv1235/lpqY | (cc=0.5003) | info on Rv1235/lpqY |
| Rv0099/fadD10 | (cc=0.4945) | info on Rv0099/fadD10 |
| Rv3560c/fadE30 | (cc=0.4889) | info on Rv3560c/fadE30 |
| Rv2498c/citE | (cc=0.4822) | info on Rv2498c/citE |
| Rv3543c/fadE29 | (cc=0.4814) | info on Rv3543c/fadE29 |
| Rv0204c/- | (cc=0.474) | info on Rv0204c/- |
| Rv2734/- | (cc=0.4704) | info on Rv2734/- |
| Rv1417/- | (cc=0.4675) | info on Rv1417/- |
Correlation of Rv1234/- with Rv1235/lpqY
Normalized LFCs for Rv1234/-:
(description and provenance of datasets)
| Rv1234/- | Rv1235/lpqY | |
| Fe_supp_jason_reseq | -0.83 | -0.923 |
| low_pH_jason_reseq | 0.085 | -0.507 |
| NO_jason_reseq | 0.425 | -0.034 |
| B6_jason_reseq | -1.557 | -1.41 |
| MHCII_jason_reseq | -1.173 | -2.564 |
| Isoniazid02 | -1.133 | -1.036 |
| Rifampicin4 | -0.615 | 0.609 |
| Ethambutol3 | 0.134 | 0.051 |
| Meropenem3 | -1.329 | -1.357 |
| Vancomycin16 | -1.143 | 0.164 |
| Rv2680_day32 | -0.117 | -2.577 |
| H37Rv_KO_MarP | 0.488 | 0.835 |
| hypoxia_3wks | -1.878 | 0.471 |
| hypoxia_6wks | -1.349 | 0.716 |
| glycerol | -0.288 | -0.418 |
| cholesterol | 1.031 | -0.035 |
| AJ | -1.98 | -2.262 |
| Bibs02 | 0.522 | -1.576 |
| Bibs02c | -2.884 | -1.175 |
| BL6 | -1.376 | -1.827 |
| BL6a | -0.926 | -1.458 |
| BXD01 | -0.15 | -1.842 |
| BXD010 | -0.726 | -1.369 |
| BXD011 | 0.433 | -1.801 |
| BXD03 | -1.746 | -2.182 |
| BXD04 | 0.22 | -0.292 |
| BXD05 | -0.017 | -2.172 |
| BXD06 | -0.843 | -1.664 |
| BXD07 | 0.969 | -1.392 |
| BXD08 | 0.196 | -1.658 |
| BXD09 | 0.083 | -1.647 |
| CAST | -0.394 | -3.717 |
| CCcont | -0.132 | -0.331 |
| DS01 | -1.769 | -1.576 |
| DS02 | -0.468 | -1.994 |
| DS04 | -1.06 | -2.927 |
| DS0c | -1.912 | -1.648 |
| GP01 | 0.79 | -1.089 |
| GP02 | -0.833 | -1.39 |
| GP0c | 0.801 | 0.015 |
| NOD | -1.796 | -3.389 |
| NZO | -0.894 | -2.006 |
| PWK | -1.729 | -3.277 |
| H37Rv_KO_CtpC | 1.033 | -1.048 |
| H37Rv_KO_CtpD | -0.949 | -0.5 |
| H37Rv_KO_Rv1272 | 0.643 | -1.653 |
| H37Rv_KO_SugABC | 1.74 | -0.661 |
| H37Rv_KO_MbtN | -0.938 | -0.128 |
| Trans05 | 1.537 | 0.089 |
| macrophage_unactivated | 0.492 | 0.0 |
| IL1 | 1.934 | 1.1 |
| Rapamycin | 1.725 | 0.997 |
| Tcell | -0.42 | -0.244 |
| GMCSF | 2.339 | 0.826 |
| IFNab | 1.097 | 0.692 |
| IFNg | 3.375 | 0.577 |
| IFNg_GMCSF1 | 2.853 | 0.396 |
| Rv1432_day32 | -2.515 | -2.173 |
| Rv1565c_day32 | -2.132 | -1.989 |
| secA2_input | 1.057 | -0.601 |
| delta_Rv3594 | 0.052 | 0.083 |
| delta_Rv3717 | 0.147 | -0.701 |
| delta_Rv3811 | -0.134 | -0.232 |
| delta_Rv0954 | 1.39 | -0.459 |
| PonA1 | 0.343 | -0.111 |
| EccD1_KO | 1.289 | -0.27 |
| EspI_KO | 1.283 | -0.057 |
| PE35_KO | 0.551 | -0.178 |
| PPE68_KO | 0.899 | -0.474 |
| glycerol2 | -1.974 | -0.383 |
| lignocerate | -1.735 | -0.459 |
| oleate | -0.332 | 0.244 |
| phosphatidylcholine | -0.98 | 0.0 |
| acetate | -1.102 | -0.231 |
| glucAc | -2.014 | -0.412 |
| Rv0950ko | 0.908 | 0.329 |
| Rv1096ko | 0.371 | 0.63 |
| Rv3684ko | 1.831 | 0.874 |
| delta_otsA_trehalose | -0.058 | 0.0 |