Top 10 genes with highest correlation to Rv1205/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2808/- | (cc=0.5379) | info on Rv2808/- |
| Rv2444c/rne | (cc=0.5325) | info on Rv2444c/rne |
| Rv0668/rpoC | (cc=0.5262) | info on Rv0668/rpoC |
| Rv3697c/vapC48 | (cc=0.5259) | info on Rv3697c/vapC48 |
| Rv1072/- | (cc=0.5009) | info on Rv1072/- |
| Rv1204c/- | (cc=0.4958) | info on Rv1204c/- |
| Rv2940c/mas | (cc=0.4738) | info on Rv2940c/mas |
| Rv3419c/gcp | (cc=0.4716) | info on Rv3419c/gcp |
| Rv1913/- | (cc=0.4704) | info on Rv1913/- |
| Rv2841c/nusA | (cc=0.4636) | info on Rv2841c/nusA |
Correlation of Rv1205/- with Rv2444c/rne
Normalized LFCs for Rv1205/-:
(description and provenance of datasets)
| Rv1205/- | Rv2444c/rne | |
| Fe_supp_jason_reseq | 0.646 | 0.279 |
| low_pH_jason_reseq | 2.096 | 0.872 |
| NO_jason_reseq | 1.546 | 1.25 |
| B6_jason_reseq | 0.654 | -0.795 |
| MHCII_jason_reseq | -0.629 | -1.175 |
| Isoniazid02 | -3.239 | -0.706 |
| Rifampicin4 | -0.246 | -0.29 |
| Ethambutol3 | 1.653 | 1.278 |
| Meropenem3 | 1.379 | -0.128 |
| Vancomycin16 | 0.363 | 0.265 |
| Rv2680_day32 | -2.474 | 0.0 |
| H37Rv_KO_MarP | 0.446 | -0.586 |
| hypoxia_3wks | -0.738 | -1.284 |
| hypoxia_6wks | 1.777 | -0.933 |
| glycerol | 0.146 | 0.157 |
| cholesterol | 1.103 | 0.864 |
| AJ | -0.111 | 1.276 |
| Bibs02 | -1.342 | 0.397 |
| Bibs02c | -1.658 | -0.365 |
| BL6 | 0.101 | 0.0 |
| BL6a | -0.895 | 0.154 |
| BXD01 | 1.127 | 0.365 |
| BXD010 | 1.113 | 0.875 |
| BXD011 | 0.035 | 1.82 |
| BXD03 | 0.454 | 1.317 |
| BXD04 | 1.045 | 0.737 |
| BXD05 | 0.144 | 0.605 |
| BXD06 | 0.448 | 1.533 |
| BXD07 | -0.386 | 0.761 |
| BXD08 | 1.2 | 1.816 |
| BXD09 | -0.26 | 0.557 |
| CAST | 2.409 | -0.402 |
| CCcont | 0.108 | 0.592 |
| DS01 | -0.044 | 0.352 |
| DS02 | 2.182 | 0.169 |
| DS04 | -0.132 | 1.405 |
| DS0c | -0.8 | 0.168 |
| GP01 | -1.821 | -0.082 |
| GP02 | -0.627 | -0.145 |
| GP0c | -1.084 | 0.888 |
| NOD | 1.028 | -0.187 |
| NZO | -0.038 | 0.298 |
| PWK | 2.781 | 2.404 |
| H37Rv_KO_CtpC | 0.693 | 0.731 |
| H37Rv_KO_CtpD | -0.708 | 0.098 |
| H37Rv_KO_Rv1272 | 0.0 | -0.246 |
| H37Rv_KO_SugABC | 1.421 | 1.373 |
| H37Rv_KO_MbtN | -0.645 | 0.9 |
| Trans05 | 0.645 | 0.779 |
| macrophage_unactivated | -2.421 | -0.795 |
| IL1 | -3.636 | -1.406 |
| Rapamycin | -2.13 | -0.988 |
| Tcell | 0.036 | 1.01 |
| GMCSF | -2.498 | -1.468 |
| IFNab | -0.206 | 0.0 |
| IFNg | -2.416 | -0.861 |
| IFNg_GMCSF1 | -1.046 | -1.747 |
| Rv1432_day32 | -2.956 | -1.304 |
| Rv1565c_day32 | -0.409 | 0.0 |
| secA2_input | 0.294 | -0.146 |
| delta_Rv3594 | -0.375 | -1.253 |
| delta_Rv3717 | 1.396 | 1.067 |
| delta_Rv3811 | 0.471 | -0.665 |
| delta_Rv0954 | -1.085 | -1.558 |
| PonA1 | -0.993 | 0.35 |
| EccD1_KO | -1.2 | 0.286 |
| EspI_KO | -1.494 | 0.0 |
| PE35_KO | -0.499 | -0.271 |
| PPE68_KO | -1.28 | -0.298 |
| glycerol2 | -0.154 | -0.193 |
| lignocerate | 0.443 | -0.168 |
| oleate | -1.358 | -0.196 |
| phosphatidylcholine | 1.301 | -0.193 |
| acetate | -0.241 | 0.209 |
| glucAc | 0.074 | 0.249 |
| Rv0950ko | -0.289 | 0.235 |
| Rv1096ko | -0.142 | -0.513 |
| Rv3684ko | -1.055 | -0.557 |
| delta_otsA_trehalose | -0.29 | -0.746 |