Top 10 genes with highest correlation to Rv1205/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2808/- | (cc=0.5379) | info on Rv2808/- |
| Rv2444c/rne | (cc=0.5325) | info on Rv2444c/rne |
| Rv0668/rpoC | (cc=0.5262) | info on Rv0668/rpoC |
| Rv3697c/vapC48 | (cc=0.5259) | info on Rv3697c/vapC48 |
| Rv1072/- | (cc=0.5009) | info on Rv1072/- |
| Rv1204c/- | (cc=0.4958) | info on Rv1204c/- |
| Rv2940c/mas | (cc=0.4738) | info on Rv2940c/mas |
| Rv3419c/gcp | (cc=0.4716) | info on Rv3419c/gcp |
| Rv1913/- | (cc=0.4704) | info on Rv1913/- |
| Rv2841c/nusA | (cc=0.4636) | info on Rv2841c/nusA |
Correlation of Rv1205/- with Rv0668/rpoC
Normalized LFCs for Rv1205/-:
(description and provenance of datasets)
| Rv1205/- | Rv0668/rpoC | |
| Fe_supp_jason_reseq | 0.646 | 0.319 |
| low_pH_jason_reseq | 2.096 | 2.259 |
| NO_jason_reseq | 1.546 | 2.809 |
| B6_jason_reseq | 0.654 | 1.836 |
| MHCII_jason_reseq | -0.629 | -0.149 |
| Isoniazid02 | -3.239 | -0.108 |
| Rifampicin4 | -0.246 | 1.172 |
| Ethambutol3 | 1.653 | -0.626 |
| Meropenem3 | 1.379 | -0.182 |
| Vancomycin16 | 0.363 | -0.196 |
| Rv2680_day32 | -2.474 | 0.0 |
| H37Rv_KO_MarP | 0.446 | 0.203 |
| hypoxia_3wks | -0.738 | -1.934 |
| hypoxia_6wks | 1.777 | 1.293 |
| glycerol | 0.146 | 0.12 |
| cholesterol | 1.103 | 0.0 |
| AJ | -0.111 | 0.934 |
| Bibs02 | -1.342 | -0.371 |
| Bibs02c | -1.658 | 0.124 |
| BL6 | 0.101 | 1.017 |
| BL6a | -0.895 | 1.175 |
| BXD01 | 1.127 | 2.02 |
| BXD010 | 1.113 | 1.496 |
| BXD011 | 0.035 | 2.698 |
| BXD03 | 0.454 | 1.173 |
| BXD04 | 1.045 | 2.865 |
| BXD05 | 0.144 | 2.213 |
| BXD06 | 0.448 | 1.994 |
| BXD07 | -0.386 | 1.825 |
| BXD08 | 1.2 | 2.118 |
| BXD09 | -0.26 | 0.974 |
| CAST | 2.409 | 1.023 |
| CCcont | 0.108 | 0.663 |
| DS01 | -0.044 | 0.522 |
| DS02 | 2.182 | 0.129 |
| DS04 | -0.132 | 0.523 |
| DS0c | -0.8 | -0.137 |
| GP01 | -1.821 | -0.277 |
| GP02 | -0.627 | -0.303 |
| GP0c | -1.084 | 0.577 |
| NOD | 1.028 | -0.142 |
| NZO | -0.038 | 0.886 |
| PWK | 2.781 | 1.537 |
| H37Rv_KO_CtpC | 0.693 | -0.455 |
| H37Rv_KO_CtpD | -0.708 | 0.51 |
| H37Rv_KO_Rv1272 | 0.0 | 0.239 |
| H37Rv_KO_SugABC | 1.421 | 1.074 |
| H37Rv_KO_MbtN | -0.645 | 1.0 |
| Trans05 | 0.645 | 1.024 |
| macrophage_unactivated | -2.421 | -0.581 |
| IL1 | -3.636 | -1.406 |
| Rapamycin | -2.13 | -0.368 |
| Tcell | 0.036 | 0.362 |
| GMCSF | -2.498 | -1.046 |
| IFNab | -0.206 | -0.363 |
| IFNg | -2.416 | -0.673 |
| IFNg_GMCSF1 | -1.046 | -1.012 |
| Rv1432_day32 | -2.956 | 0.139 |
| Rv1565c_day32 | -0.409 | -0.588 |
| secA2_input | 0.294 | 0.445 |
| delta_Rv3594 | -0.375 | -0.061 |
| delta_Rv3717 | 1.396 | 1.233 |
| delta_Rv3811 | 0.471 | 0.559 |
| delta_Rv0954 | -1.085 | -1.562 |
| PonA1 | -0.993 | -1.2 |
| EccD1_KO | -1.2 | 0.0 |
| EspI_KO | -1.494 | 0.211 |
| PE35_KO | -0.499 | 0.42 |
| PPE68_KO | -1.28 | -0.512 |
| glycerol2 | -0.154 | -1.073 |
| lignocerate | 0.443 | -0.22 |
| oleate | -1.358 | -1.086 |
| phosphatidylcholine | 1.301 | 0.224 |
| acetate | -0.241 | 0.507 |
| glucAc | 0.074 | 0.279 |
| Rv0950ko | -0.289 | 0.0 |
| Rv1096ko | -0.142 | -0.832 |
| Rv3684ko | -1.055 | -1.159 |
| delta_otsA_trehalose | -0.29 | -0.773 |