Top 10 genes with highest correlation to Rv1149/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1042c/- | (cc=0.8949) | info on Rv1042c/- |
| Rv1041c/- | (cc=0.5896) | info on Rv1041c/- |
| Rv1135c/PPE16 | (cc=0.5268) | info on Rv1135c/PPE16 |
| Rv2673/aftC | (cc=0.481) | info on Rv2673/aftC |
| Rv2270/lppN | (cc=0.4556) | info on Rv2270/lppN |
| Rv1773c/- | (cc=0.4541) | info on Rv1773c/- |
| Rv3392c/cmaA1 | (cc=0.4458) | info on Rv3392c/cmaA1 |
| Rv2811/- | (cc=0.4378) | info on Rv2811/- |
| Rv2854/- | (cc=0.4282) | info on Rv2854/- |
| Rv0817c/- | (cc=0.4256) | info on Rv0817c/- |
Correlation of Rv1149/- with Rv2270/lppN
Normalized LFCs for Rv1149/-:
(description and provenance of datasets)
| Rv1149/- | Rv2270/lppN | |
| Fe_supp_jason_reseq | -1.566 | 0.71 |
| low_pH_jason_reseq | -1.532 | -0.323 |
| NO_jason_reseq | -0.37 | -0.318 |
| B6_jason_reseq | 0.532 | 0.63 |
| MHCII_jason_reseq | 0.553 | -0.077 |
| Isoniazid02 | 0.048 | -0.26 |
| Rifampicin4 | 1.235 | 0.401 |
| Ethambutol3 | 0.495 | -0.185 |
| Meropenem3 | 0.767 | 0.398 |
| Vancomycin16 | 0.499 | 0.096 |
| Rv2680_day32 | -0.613 | 0.184 |
| H37Rv_KO_MarP | 0.073 | 0.459 |
| hypoxia_3wks | 1.236 | -0.315 |
| hypoxia_6wks | 1.347 | -0.031 |
| glycerol | 0.255 | 0.553 |
| cholesterol | 0.146 | -0.164 |
| AJ | 0.813 | -0.629 |
| Bibs02 | 0.287 | -1.25 |
| Bibs02c | 1.363 | 0.638 |
| BL6 | -0.264 | -1.299 |
| BL6a | 0.913 | -0.033 |
| BXD01 | 0.281 | -0.933 |
| BXD010 | 0.804 | 0.595 |
| BXD011 | -0.142 | 0.081 |
| BXD03 | 0.807 | -1.289 |
| BXD04 | -0.546 | -0.581 |
| BXD05 | 0.505 | 0.086 |
| BXD06 | 0.326 | -0.435 |
| BXD07 | 0.399 | -0.222 |
| BXD08 | -0.707 | -0.931 |
| BXD09 | 0.493 | -0.184 |
| CAST | 0.232 | -0.324 |
| CCcont | -0.865 | -1.924 |
| DS01 | 0.743 | -0.058 |
| DS02 | 0.432 | -0.246 |
| DS04 | 0.195 | -0.505 |
| DS0c | 0.03 | -0.284 |
| GP01 | -2.51 | -0.614 |
| GP02 | -1.23 | -0.102 |
| GP0c | -0.676 | -0.734 |
| NOD | 1.751 | 0.805 |
| NZO | 0.0 | -0.964 |
| PWK | 0.895 | 0.033 |
| H37Rv_KO_CtpC | 3.594 | 0.104 |
| H37Rv_KO_CtpD | 1.213 | -0.251 |
| H37Rv_KO_Rv1272 | 0.01 | 0.998 |
| H37Rv_KO_SugABC | -1.653 | 0.159 |
| H37Rv_KO_MbtN | 0.607 | -0.597 |
| Trans05 | 0.951 | 0.103 |
| macrophage_unactivated | -0.432 | -0.376 |
| IL1 | 0.059 | 0.273 |
| Rapamycin | 0.092 | -0.761 |
| Tcell | 0.254 | -0.124 |
| GMCSF | 0.106 | -0.597 |
| IFNab | -0.184 | -0.057 |
| IFNg | -0.136 | 0.43 |
| IFNg_GMCSF1 | -0.063 | 0.346 |
| Rv1432_day32 | 0.658 | 0.621 |
| Rv1565c_day32 | 1.054 | -1.199 |
| secA2_input | 0.734 | -1.276 |
| delta_Rv3594 | 0.165 | 1.115 |
| delta_Rv3717 | 1.187 | 0.203 |
| delta_Rv3811 | 0.745 | 1.715 |
| delta_Rv0954 | 0.933 | 0.048 |
| PonA1 | -0.591 | -0.235 |
| EccD1_KO | 1.885 | 1.579 |
| EspI_KO | 1.6 | 1.845 |
| PE35_KO | 1.671 | 3.106 |
| PPE68_KO | 2.451 | 3.318 |
| glycerol2 | -0.719 | -1.544 |
| lignocerate | -0.865 | -2.176 |
| oleate | -0.293 | -1.198 |
| phosphatidylcholine | -0.629 | -1.751 |
| acetate | -0.547 | -2.622 |
| glucAc | -0.572 | -2.001 |
| Rv0950ko | 0.859 | 0.464 |
| Rv1096ko | 1.517 | -0.341 |
| Rv3684ko | 0.933 | -0.144 |
| delta_otsA_trehalose | -0.873 | 0.272 |