Top 10 genes with highest correlation to Rv1112/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3269/- | (cc=0.6543) | info on Rv3269/- |
| Rv1008/tatD | (cc=0.6147) | info on Rv1008/tatD |
| Rv1170/mshB | (cc=0.6083) | info on Rv1170/mshB |
| Rv3624c/hpt | (cc=0.5741) | info on Rv3624c/hpt |
| Rv3755c/- | (cc=0.5657) | info on Rv3755c/- |
| Rv0819/mshD | (cc=0.558) | info on Rv0819/mshD |
| Rv2131c/cysQ | (cc=0.5561) | info on Rv2131c/cysQ |
| Rv2404c/lepA | (cc=0.5434) | info on Rv2404c/lepA |
| Rv1908c/katG | (cc=0.5319) | info on Rv1908c/katG |
| Rv3715c/recR | (cc=0.53) | info on Rv3715c/recR |
Correlation of Rv1112/- with Rv3755c/-
Normalized LFCs for Rv1112/-:
(description and provenance of datasets)
| Rv1112/- | Rv3755c/- | |
| Fe_supp_jason_reseq | 1.901 | 0.706 |
| low_pH_jason_reseq | -1.571 | -0.979 |
| NO_jason_reseq | 0.315 | -0.969 |
| B6_jason_reseq | -0.913 | -2.07 |
| MHCII_jason_reseq | 0.0 | -2.8 |
| Isoniazid02 | 3.87 | 3.111 |
| Rifampicin4 | 0.712 | -0.344 |
| Ethambutol3 | 1.414 | 0.705 |
| Meropenem3 | 0.426 | 1.452 |
| Vancomycin16 | 1.602 | 0.382 |
| Rv2680_day32 | 0.109 | -1.501 |
| H37Rv_KO_MarP | 2.428 | 1.008 |
| hypoxia_3wks | -2.68 | -1.232 |
| hypoxia_6wks | -2.533 | -1.029 |
| glycerol | 2.487 | -0.471 |
| cholesterol | 1.62 | 1.302 |
| AJ | 1.78 | 0.129 |
| Bibs02 | 0.0 | -0.034 |
| Bibs02c | 0.0 | 0.0 |
| BL6 | 1.574 | -0.384 |
| BL6a | 1.964 | 0.558 |
| BXD01 | 1.496 | 0.347 |
| BXD010 | 1.739 | 0.999 |
| BXD011 | 0.612 | -0.424 |
| BXD03 | 1.146 | 1.706 |
| BXD04 | 1.588 | 1.988 |
| BXD05 | 1.241 | -0.052 |
| BXD06 | 2.098 | 1.243 |
| BXD07 | 0.809 | 0.22 |
| BXD08 | 1.227 | 0.775 |
| BXD09 | 2.005 | 0.312 |
| CAST | 1.458 | -0.23 |
| CCcont | 4.277 | 1.48 |
| DS01 | 0.551 | 0.45 |
| DS02 | 0.35 | 0.159 |
| DS04 | 1.32 | 0.275 |
| DS0c | 0.652 | 1.53 |
| GP01 | 0.36 | -1.412 |
| GP02 | -0.159 | -1.324 |
| GP0c | -0.248 | -1.245 |
| NOD | 2.071 | -0.042 |
| NZO | 1.357 | -0.419 |
| PWK | 0.715 | 1.142 |
| H37Rv_KO_CtpC | 0.0 | 0.946 |
| H37Rv_KO_CtpD | 1.689 | 1.742 |
| H37Rv_KO_Rv1272 | 0.753 | 0.896 |
| H37Rv_KO_SugABC | 1.666 | 0.736 |
| H37Rv_KO_MbtN | 1.959 | 0.518 |
| Trans05 | 0.628 | -0.025 |
| macrophage_unactivated | 0.571 | 0.587 |
| IL1 | -1.326 | -2.367 |
| Rapamycin | -0.307 | -0.853 |
| Tcell | 0.303 | 0.857 |
| GMCSF | -0.85 | 0.048 |
| IFNab | 0.795 | -0.112 |
| IFNg | -1.563 | -1.89 |
| IFNg_GMCSF1 | -0.647 | -1.458 |
| Rv1432_day32 | 1.155 | -1.254 |
| Rv1565c_day32 | -0.256 | -1.842 |
| secA2_input | -0.676 | -1.313 |
| delta_Rv3594 | 4.577 | 0.387 |
| delta_Rv3717 | 4.406 | 0.346 |
| delta_Rv3811 | 3.248 | -0.109 |
| delta_Rv0954 | 0.969 | 0.903 |
| PonA1 | -0.245 | -0.329 |
| EccD1_KO | -1.542 | 0.572 |
| EspI_KO | -1.879 | -0.057 |
| PE35_KO | -0.548 | 0.131 |
| PPE68_KO | -0.902 | -0.064 |
| glycerol2 | 0.395 | -1.46 |
| lignocerate | -0.764 | -1.578 |
| oleate | -0.588 | -0.903 |
| phosphatidylcholine | -1.751 | -1.55 |
| acetate | 1.536 | -0.214 |
| glucAc | 2.08 | -0.168 |
| Rv0950ko | 0.862 | 0.549 |
| Rv1096ko | 0.398 | -0.362 |
| Rv3684ko | 0.829 | 0.786 |
| delta_otsA_trehalose | 0.4 | -0.952 |