Top 10 genes with highest correlation to Rv1112/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3269/- | (cc=0.6543) | info on Rv3269/- |
| Rv1008/tatD | (cc=0.6147) | info on Rv1008/tatD |
| Rv1170/mshB | (cc=0.6083) | info on Rv1170/mshB |
| Rv3624c/hpt | (cc=0.5741) | info on Rv3624c/hpt |
| Rv3755c/- | (cc=0.5657) | info on Rv3755c/- |
| Rv0819/mshD | (cc=0.558) | info on Rv0819/mshD |
| Rv2131c/cysQ | (cc=0.5561) | info on Rv2131c/cysQ |
| Rv2404c/lepA | (cc=0.5434) | info on Rv2404c/lepA |
| Rv1908c/katG | (cc=0.5319) | info on Rv1908c/katG |
| Rv3715c/recR | (cc=0.53) | info on Rv3715c/recR |
Correlation of Rv1112/- with Rv0819/mshD
Normalized LFCs for Rv1112/-:
(description and provenance of datasets)
| Rv1112/- | Rv0819/mshD | |
| Fe_supp_jason_reseq | 1.901 | 2.234 |
| low_pH_jason_reseq | -1.571 | 0.219 |
| NO_jason_reseq | 0.315 | -1.536 |
| B6_jason_reseq | -0.913 | 0.461 |
| MHCII_jason_reseq | 0.0 | -0.789 |
| Isoniazid02 | 3.87 | 4.505 |
| Rifampicin4 | 0.712 | 0.655 |
| Ethambutol3 | 1.414 | 1.105 |
| Meropenem3 | 0.426 | -0.999 |
| Vancomycin16 | 1.602 | 0.355 |
| Rv2680_day32 | 0.109 | 3.755 |
| H37Rv_KO_MarP | 2.428 | -0.872 |
| hypoxia_3wks | -2.68 | -2.831 |
| hypoxia_6wks | -2.533 | -0.232 |
| glycerol | 2.487 | 0.424 |
| cholesterol | 1.62 | 1.943 |
| AJ | 1.78 | 0.373 |
| Bibs02 | 0.0 | 0.294 |
| Bibs02c | 0.0 | 1.576 |
| BL6 | 1.574 | -0.425 |
| BL6a | 1.964 | 1.254 |
| BXD01 | 1.496 | 1.185 |
| BXD010 | 1.739 | 1.0 |
| BXD011 | 0.612 | 0.847 |
| BXD03 | 1.146 | 1.472 |
| BXD04 | 1.588 | 1.095 |
| BXD05 | 1.241 | 0.895 |
| BXD06 | 2.098 | 1.397 |
| BXD07 | 0.809 | 0.587 |
| BXD08 | 1.227 | 0.564 |
| BXD09 | 2.005 | 2.443 |
| CAST | 1.458 | 0.692 |
| CCcont | 4.277 | 2.248 |
| DS01 | 0.551 | 0.811 |
| DS02 | 0.35 | -0.922 |
| DS04 | 1.32 | 0.498 |
| DS0c | 0.652 | -1.116 |
| GP01 | 0.36 | 0.561 |
| GP02 | -0.159 | 0.627 |
| GP0c | -0.248 | 0.551 |
| NOD | 2.071 | -1.155 |
| NZO | 1.357 | -0.525 |
| PWK | 0.715 | -0.666 |
| H37Rv_KO_CtpC | 0.0 | 0.179 |
| H37Rv_KO_CtpD | 1.689 | 1.023 |
| H37Rv_KO_Rv1272 | 0.753 | 0.938 |
| H37Rv_KO_SugABC | 1.666 | 2.66 |
| H37Rv_KO_MbtN | 1.959 | -0.127 |
| Trans05 | 0.628 | 0.503 |
| macrophage_unactivated | 0.571 | -1.496 |
| IL1 | -1.326 | -1.649 |
| Rapamycin | -0.307 | -1.215 |
| Tcell | 0.303 | -0.391 |
| GMCSF | -0.85 | -2.49 |
| IFNab | 0.795 | 0.795 |
| IFNg | -1.563 | -1.97 |
| IFNg_GMCSF1 | -0.647 | -0.578 |
| Rv1432_day32 | 1.155 | 0.0 |
| Rv1565c_day32 | -0.256 | -0.218 |
| secA2_input | -0.676 | 0.064 |
| delta_Rv3594 | 4.577 | 1.508 |
| delta_Rv3717 | 4.406 | 1.464 |
| delta_Rv3811 | 3.248 | 1.591 |
| delta_Rv0954 | 0.969 | 0.68 |
| PonA1 | -0.245 | -0.291 |
| EccD1_KO | -1.542 | -2.259 |
| EspI_KO | -1.879 | -0.901 |
| PE35_KO | -0.548 | 1.622 |
| PPE68_KO | -0.902 | 1.001 |
| glycerol2 | 0.395 | -2.128 |
| lignocerate | -0.764 | -1.972 |
| oleate | -0.588 | -1.839 |
| phosphatidylcholine | -1.751 | -2.196 |
| acetate | 1.536 | -0.028 |
| glucAc | 2.08 | -0.562 |
| Rv0950ko | 0.862 | -1.402 |
| Rv1096ko | 0.398 | 2.31 |
| Rv3684ko | 0.829 | 0.593 |
| delta_otsA_trehalose | 0.4 | -0.867 |