Top 10 genes with highest correlation to Rv1112/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3269/- | (cc=0.6543) | info on Rv3269/- |
| Rv1008/tatD | (cc=0.6147) | info on Rv1008/tatD |
| Rv1170/mshB | (cc=0.6083) | info on Rv1170/mshB |
| Rv3624c/hpt | (cc=0.5741) | info on Rv3624c/hpt |
| Rv3755c/- | (cc=0.5657) | info on Rv3755c/- |
| Rv0819/mshD | (cc=0.558) | info on Rv0819/mshD |
| Rv2131c/cysQ | (cc=0.5561) | info on Rv2131c/cysQ |
| Rv2404c/lepA | (cc=0.5434) | info on Rv2404c/lepA |
| Rv1908c/katG | (cc=0.5319) | info on Rv1908c/katG |
| Rv3715c/recR | (cc=0.53) | info on Rv3715c/recR |
Correlation of Rv1112/- with Rv3269/-
Normalized LFCs for Rv1112/-:
(description and provenance of datasets)
| Rv1112/- | Rv3269/- | |
| Fe_supp_jason_reseq | 1.901 | 2.502 |
| low_pH_jason_reseq | -1.571 | -0.811 |
| NO_jason_reseq | 0.315 | -1.273 |
| B6_jason_reseq | -0.913 | -0.119 |
| MHCII_jason_reseq | 0.0 | 0.189 |
| Isoniazid02 | 3.87 | 1.759 |
| Rifampicin4 | 0.712 | -0.523 |
| Ethambutol3 | 1.414 | -0.399 |
| Meropenem3 | 0.426 | -0.648 |
| Vancomycin16 | 1.602 | -1.995 |
| Rv2680_day32 | 0.109 | 0.0 |
| H37Rv_KO_MarP | 2.428 | -1.411 |
| hypoxia_3wks | -2.68 | -3.218 |
| hypoxia_6wks | -2.533 | -1.815 |
| glycerol | 2.487 | 0.0 |
| cholesterol | 1.62 | 2.81 |
| AJ | 1.78 | 1.425 |
| Bibs02 | 0.0 | 0.183 |
| Bibs02c | 0.0 | 0.0 |
| BL6 | 1.574 | 0.125 |
| BL6a | 1.964 | 1.897 |
| BXD01 | 1.496 | 1.247 |
| BXD010 | 1.739 | 0.128 |
| BXD011 | 0.612 | 0.987 |
| BXD03 | 1.146 | 0.475 |
| BXD04 | 1.588 | 0.0 |
| BXD05 | 1.241 | 0.135 |
| BXD06 | 2.098 | 0.366 |
| BXD07 | 0.809 | 0.851 |
| BXD08 | 1.227 | 0.133 |
| BXD09 | 2.005 | 0.943 |
| CAST | 1.458 | 0.439 |
| CCcont | 4.277 | 3.546 |
| DS01 | 0.551 | 1.451 |
| DS02 | 0.35 | 0.0 |
| DS04 | 1.32 | 0.822 |
| DS0c | 0.652 | 0.0 |
| GP01 | 0.36 | 0.0 |
| GP02 | -0.159 | 0.0 |
| GP0c | -0.248 | 0.0 |
| NOD | 2.071 | 0.0 |
| NZO | 1.357 | 0.701 |
| PWK | 0.715 | 0.374 |
| H37Rv_KO_CtpC | 0.0 | 2.984 |
| H37Rv_KO_CtpD | 1.689 | 0.537 |
| H37Rv_KO_Rv1272 | 0.753 | 0.141 |
| H37Rv_KO_SugABC | 1.666 | 1.066 |
| H37Rv_KO_MbtN | 1.959 | 1.109 |
| Trans05 | 0.628 | 0.249 |
| macrophage_unactivated | 0.571 | -0.275 |
| IL1 | -1.326 | -1.863 |
| Rapamycin | -0.307 | -1.188 |
| Tcell | 0.303 | -1.639 |
| GMCSF | -0.85 | -1.328 |
| IFNab | 0.795 | -0.547 |
| IFNg | -1.563 | -1.034 |
| IFNg_GMCSF1 | -0.647 | -2.407 |
| Rv1432_day32 | 1.155 | 0.0 |
| Rv1565c_day32 | -0.256 | 1.895 |
| secA2_input | -0.676 | -1.691 |
| delta_Rv3594 | 4.577 | 2.951 |
| delta_Rv3717 | 4.406 | 2.246 |
| delta_Rv3811 | 3.248 | 2.342 |
| delta_Rv0954 | 0.969 | 0.391 |
| PonA1 | -0.245 | 1.1 |
| EccD1_KO | -1.542 | -1.825 |
| EspI_KO | -1.879 | -0.75 |
| PE35_KO | -0.548 | 0.548 |
| PPE68_KO | -0.902 | -0.618 |
| glycerol2 | 0.395 | -1.6 |
| lignocerate | -0.764 | -1.529 |
| oleate | -0.588 | -1.187 |
| phosphatidylcholine | -1.751 | -2.094 |
| acetate | 1.536 | -1.034 |
| glucAc | 2.08 | -0.899 |
| Rv0950ko | 0.862 | 0.862 |
| Rv1096ko | 0.398 | -1.559 |
| Rv3684ko | 0.829 | 0.0 |
| delta_otsA_trehalose | 0.4 | -0.204 |