Top 10 genes with highest correlation to Rv1089/PE10:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1367c/- | (cc=0.5889) | info on Rv1367c/- |
| Rv2015c/- | (cc=0.5744) | info on Rv2015c/- |
| Rv2559c/- | (cc=0.574) | info on Rv2559c/- |
| Rv1737c/narK2 | (cc=0.5677) | info on Rv1737c/narK2 |
| Rv2490c/PE_PGRS43 | (cc=0.5674) | info on Rv2490c/PE_PGRS43 |
| Rv0623/vapB30 | (cc=0.5617) | info on Rv0623/vapB30 |
| Rv0359/- | (cc=0.544) | info on Rv0359/- |
| Rv2340c/PE_PGRS39 | (cc=0.5391) | info on Rv2340c/PE_PGRS39 |
| Rv1032c/trcS | (cc=0.5366) | info on Rv1032c/trcS |
| Rv1765c/- | (cc=0.5314) | info on Rv1765c/- |
Correlation of Rv1089/PE10 with Rv0623/vapB30
Normalized LFCs for Rv1089/PE10:
(description and provenance of datasets)
| Rv1089/PE10 | Rv0623/vapB30 | |
| Fe_supp_jason_reseq | 2.729 | -0.863 |
| low_pH_jason_reseq | -1.549 | 0.316 |
| NO_jason_reseq | 1.467 | -0.811 |
| B6_jason_reseq | 1.672 | -2.562 |
| MHCII_jason_reseq | 2.369 | -0.728 |
| Isoniazid02 | 0.53 | -0.1 |
| Rifampicin4 | 1.633 | 1.289 |
| Ethambutol3 | 3.017 | 0.0 |
| Meropenem3 | 1.224 | 0.771 |
| Vancomycin16 | 0.727 | 0.95 |
| Rv2680_day32 | -0.131 | 0.473 |
| H37Rv_KO_MarP | 1.531 | 0.21 |
| hypoxia_3wks | -0.407 | 0.837 |
| hypoxia_6wks | -1.585 | -1.806 |
| glycerol | 2.092 | 1.072 |
| cholesterol | -0.197 | -0.829 |
| AJ | 1.782 | 2.286 |
| Bibs02 | 1.062 | -1.763 |
| Bibs02c | 0.433 | 1.529 |
| BL6 | -2.751 | -2.766 |
| BL6a | -0.682 | 1.052 |
| BXD01 | -1.73 | -2.881 |
| BXD010 | -1.438 | 0.844 |
| BXD011 | -0.659 | -1.04 |
| BXD03 | -1.087 | -2.991 |
| BXD04 | -0.864 | -2.499 |
| BXD05 | 0.236 | 0.447 |
| BXD06 | -1.403 | -0.823 |
| BXD07 | -2.116 | -2.576 |
| BXD08 | -1.596 | -2.474 |
| BXD09 | -1.091 | -2.512 |
| CAST | 0.617 | -0.375 |
| CCcont | -1.854 | -3.303 |
| DS01 | -0.498 | 0.334 |
| DS02 | -1.218 | 1.237 |
| DS04 | 0.614 | 1.117 |
| DS0c | 0.938 | 0.679 |
| GP01 | 1.922 | -0.388 |
| GP02 | 0.613 | -0.374 |
| GP0c | 2.39 | 0.125 |
| NOD | -1.57 | -0.685 |
| NZO | 1.445 | 1.274 |
| PWK | 0.19 | -0.439 |
| H37Rv_KO_CtpC | -0.268 | -2.904 |
| H37Rv_KO_CtpD | 0.315 | 2.332 |
| H37Rv_KO_Rv1272 | -2.007 | -1.891 |
| H37Rv_KO_SugABC | -1.076 | -1.642 |
| H37Rv_KO_MbtN | -0.43 | -0.525 |
| Trans05 | -0.236 | -1.179 |
| macrophage_unactivated | -1.424 | -6.0 |
| IL1 | -0.676 | -3.883 |
| Rapamycin | -2.756 | -2.556 |
| Tcell | -2.326 | -5.973 |
| GMCSF | -3.137 | -0.734 |
| IFNab | -0.447 | -2.799 |
| IFNg | -0.294 | 0.134 |
| IFNg_GMCSF1 | -2.064 | -1.719 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | 1.315 | 2.331 |
| delta_Rv3594 | -0.45 | -1.319 |
| delta_Rv3717 | -0.37 | -1.307 |
| delta_Rv3811 | 0.033 | -0.721 |
| delta_Rv0954 | -0.527 | -2.804 |
| PonA1 | -2.233 | -4.736 |
| EccD1_KO | 1.924 | 1.924 |
| EspI_KO | 0.0 | 0.55 |
| PE35_KO | 3.652 | 1.286 |
| PPE68_KO | 2.62 | 4.649 |
| glycerol2 | 0.27 | 0.0 |
| lignocerate | 0.684 | 0.32 |
| oleate | -1.323 | 0.0 |
| phosphatidylcholine | 0.183 | 0.0 |
| acetate | 0.321 | 0.0 |
| glucAc | -0.405 | 0.0 |
| Rv0950ko | 1.155 | -1.541 |
| Rv1096ko | -0.293 | 0.956 |
| Rv3684ko | 1.333 | -1.222 |
| delta_otsA_trehalose | -1.776 | -1.645 |