Top 10 genes with highest correlation to Rv1055/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2219A/- | (cc=0.5622) | info on Rv2219A/- |
| Rv1026/- | (cc=0.484) | info on Rv1026/- |
| Rv3084/lipR | (cc=0.4666) | info on Rv3084/lipR |
| Rv0677c/mmpS5 | (cc=0.4637) | info on Rv0677c/mmpS5 |
| Rv2133c/- | (cc=0.4446) | info on Rv2133c/- |
| Rv3334/- | (cc=0.4336) | info on Rv3334/- |
| Rv0150c/- | (cc=0.4309) | info on Rv0150c/- |
| Rv0330c/- | (cc=0.4145) | info on Rv0330c/- |
| Rv1028c/kdpD | (cc=0.412) | info on Rv1028c/kdpD |
| Rv1687c/- | (cc=0.4103) | info on Rv1687c/- |
Correlation of Rv1055/- with Rv3334/-
Normalized LFCs for Rv1055/-:
(description and provenance of datasets)
| Rv1055/- | Rv3334/- | |
| Fe_supp_jason_reseq | -1.255 | 0.346 |
| low_pH_jason_reseq | 0.579 | 0.535 |
| NO_jason_reseq | 0.063 | 0.202 |
| B6_jason_reseq | 1.11 | 0.019 |
| MHCII_jason_reseq | -2.503 | 0.075 |
| Isoniazid02 | 0.444 | 0.374 |
| Rifampicin4 | -1.362 | 0.027 |
| Ethambutol3 | -0.22 | -0.161 |
| Meropenem3 | -0.464 | 0.134 |
| Vancomycin16 | 0.218 | 0.345 |
| Rv2680_day32 | -2.73 | -2.671 |
| H37Rv_KO_MarP | 2.069 | 1.031 |
| hypoxia_3wks | 0.678 | 0.762 |
| hypoxia_6wks | 0.269 | -0.443 |
| glycerol | -1.204 | -1.295 |
| cholesterol | 0.324 | -0.753 |
| AJ | 0.477 | 0.254 |
| Bibs02 | -1.325 | 0.785 |
| Bibs02c | -0.252 | -0.809 |
| BL6 | -1.995 | -0.059 |
| BL6a | 0.172 | -0.057 |
| BXD01 | -2.078 | 0.115 |
| BXD010 | -1.799 | 0.309 |
| BXD011 | -0.059 | 0.325 |
| BXD03 | 1.511 | 0.038 |
| BXD04 | -1.537 | -0.014 |
| BXD05 | -1.32 | 0.112 |
| BXD06 | -0.422 | -0.272 |
| BXD07 | -1.529 | 0.309 |
| BXD08 | -1.653 | -0.224 |
| BXD09 | -0.783 | -0.19 |
| CAST | 0.474 | 0.556 |
| CCcont | -2.382 | -0.736 |
| DS01 | 1.456 | 0.548 |
| DS02 | -0.558 | -0.551 |
| DS04 | 0.249 | 0.572 |
| DS0c | 1.496 | 0.074 |
| GP01 | 0.448 | 0.098 |
| GP02 | -0.919 | 0.074 |
| GP0c | 0.882 | -1.215 |
| NOD | 0.918 | 1.902 |
| NZO | -1.035 | 0.25 |
| PWK | -1.512 | 0.894 |
| H37Rv_KO_CtpC | -2.019 | -0.712 |
| H37Rv_KO_CtpD | -1.673 | -1.507 |
| H37Rv_KO_Rv1272 | -1.652 | 0.268 |
| H37Rv_KO_SugABC | -1.308 | -0.624 |
| H37Rv_KO_MbtN | -1.541 | -0.181 |
| Trans05 | 2.805 | 0.516 |
| macrophage_unactivated | -2.396 | -0.107 |
| IL1 | 2.225 | -0.074 |
| Rapamycin | 4.996 | 0.681 |
| Tcell | 1.763 | 0.212 |
| GMCSF | 2.891 | 0.771 |
| IFNab | -0.417 | 0.29 |
| IFNg | 0.644 | 0.575 |
| IFNg_GMCSF1 | 1.973 | 1.625 |
| Rv1432_day32 | 0.0 | -1.454 |
| Rv1565c_day32 | 0.0 | 1.042 |
| secA2_input | -3.496 | -1.586 |
| delta_Rv3594 | 4.061 | 0.514 |
| delta_Rv3717 | 3.989 | 0.49 |
| delta_Rv3811 | 1.139 | 0.416 |
| delta_Rv0954 | 4.679 | 0.525 |
| PonA1 | 0.675 | 0.187 |
| EccD1_KO | 1.204 | 1.266 |
| EspI_KO | 0.265 | 1.169 |
| PE35_KO | -1.435 | 0.391 |
| PPE68_KO | -0.429 | 0.333 |
| glycerol2 | -1.684 | -0.307 |
| lignocerate | -1.464 | -1.102 |
| oleate | -1.704 | 0.347 |
| phosphatidylcholine | -1.683 | 1.318 |
| acetate | -1.998 | -1.77 |
| glucAc | -1.242 | -2.307 |
| Rv0950ko | 3.706 | 0.238 |
| Rv1096ko | 3.706 | 0.317 |
| Rv3684ko | 0.0 | 0.147 |
| delta_otsA_trehalose | 0.699 | 1.149 |