Top 10 genes with highest correlation to Rv1055/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2219A/- | (cc=0.5622) | info on Rv2219A/- |
| Rv1026/- | (cc=0.484) | info on Rv1026/- |
| Rv3084/lipR | (cc=0.4666) | info on Rv3084/lipR |
| Rv0677c/mmpS5 | (cc=0.4637) | info on Rv0677c/mmpS5 |
| Rv2133c/- | (cc=0.4446) | info on Rv2133c/- |
| Rv3334/- | (cc=0.4336) | info on Rv3334/- |
| Rv0150c/- | (cc=0.4309) | info on Rv0150c/- |
| Rv0330c/- | (cc=0.4145) | info on Rv0330c/- |
| Rv1028c/kdpD | (cc=0.412) | info on Rv1028c/kdpD |
| Rv1687c/- | (cc=0.4103) | info on Rv1687c/- |
Correlation of Rv1055/- with Rv1026/-
Normalized LFCs for Rv1055/-:
(description and provenance of datasets)
| Rv1055/- | Rv1026/- | |
| Fe_supp_jason_reseq | -1.255 | -0.715 |
| low_pH_jason_reseq | 0.579 | 2.175 |
| NO_jason_reseq | 0.063 | -0.633 |
| B6_jason_reseq | 1.11 | -0.128 |
| MHCII_jason_reseq | -2.503 | -1.213 |
| Isoniazid02 | 0.444 | 0.146 |
| Rifampicin4 | -1.362 | 1.394 |
| Ethambutol3 | -0.22 | 0.235 |
| Meropenem3 | -0.464 | 0.12 |
| Vancomycin16 | 0.218 | -0.284 |
| Rv2680_day32 | -2.73 | 0.0 |
| H37Rv_KO_MarP | 2.069 | 0.385 |
| hypoxia_3wks | 0.678 | 0.339 |
| hypoxia_6wks | 0.269 | -0.606 |
| glycerol | -1.204 | 0.451 |
| cholesterol | 0.324 | 0.638 |
| AJ | 0.477 | 0.698 |
| Bibs02 | -1.325 | -1.069 |
| Bibs02c | -0.252 | 0.293 |
| BL6 | -1.995 | -0.845 |
| BL6a | 0.172 | 0.595 |
| BXD01 | -2.078 | 0.343 |
| BXD010 | -1.799 | -0.749 |
| BXD011 | -0.059 | -0.281 |
| BXD03 | 1.511 | 1.386 |
| BXD04 | -1.537 | 0.372 |
| BXD05 | -1.32 | -0.216 |
| BXD06 | -0.422 | 0.752 |
| BXD07 | -1.529 | 0.0 |
| BXD08 | -1.653 | 0.243 |
| BXD09 | -0.783 | 1.789 |
| CAST | 0.474 | 0.514 |
| CCcont | -2.382 | -1.009 |
| DS01 | 1.456 | 1.189 |
| DS02 | -0.558 | 0.397 |
| DS04 | 0.249 | 0.354 |
| DS0c | 1.496 | 1.403 |
| GP01 | 0.448 | -0.667 |
| GP02 | -0.919 | -0.562 |
| GP0c | 0.882 | 1.693 |
| NOD | 0.918 | -0.234 |
| NZO | -1.035 | -0.101 |
| PWK | -1.512 | -0.557 |
| H37Rv_KO_CtpC | -2.019 | -0.461 |
| H37Rv_KO_CtpD | -1.673 | 0.061 |
| H37Rv_KO_Rv1272 | -1.652 | -1.093 |
| H37Rv_KO_SugABC | -1.308 | -0.579 |
| H37Rv_KO_MbtN | -1.541 | -0.799 |
| Trans05 | 2.805 | -0.883 |
| macrophage_unactivated | -2.396 | 1.49 |
| IL1 | 2.225 | -0.285 |
| Rapamycin | 4.996 | 0.902 |
| Tcell | 1.763 | -0.313 |
| GMCSF | 2.891 | 1.156 |
| IFNab | -0.417 | 0.139 |
| IFNg | 0.644 | 0.577 |
| IFNg_GMCSF1 | 1.973 | 0.418 |
| Rv1432_day32 | 0.0 | 1.265 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | -3.496 | -1.796 |
| delta_Rv3594 | 4.061 | 0.997 |
| delta_Rv3717 | 3.989 | 2.702 |
| delta_Rv3811 | 1.139 | 2.198 |
| delta_Rv0954 | 4.679 | 0.925 |
| PonA1 | 0.675 | 0.419 |
| EccD1_KO | 1.204 | 0.395 |
| EspI_KO | 0.265 | -0.183 |
| PE35_KO | -1.435 | -1.272 |
| PPE68_KO | -0.429 | 0.0 |
| glycerol2 | -1.684 | -1.572 |
| lignocerate | -1.464 | -1.266 |
| oleate | -1.704 | 0.308 |
| phosphatidylcholine | -1.683 | -1.144 |
| acetate | -1.998 | -2.331 |
| glucAc | -1.242 | -1.952 |
| Rv0950ko | 3.706 | -0.172 |
| Rv1096ko | 3.706 | 0.477 |
| Rv3684ko | 0.0 | 1.916 |
| delta_otsA_trehalose | 0.699 | 1.321 |