Top 10 genes with highest correlation to Rv1055/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2219A/- | (cc=0.5622) | info on Rv2219A/- |
| Rv1026/- | (cc=0.484) | info on Rv1026/- |
| Rv3084/lipR | (cc=0.4666) | info on Rv3084/lipR |
| Rv0677c/mmpS5 | (cc=0.4637) | info on Rv0677c/mmpS5 |
| Rv2133c/- | (cc=0.4446) | info on Rv2133c/- |
| Rv3334/- | (cc=0.4336) | info on Rv3334/- |
| Rv0150c/- | (cc=0.4309) | info on Rv0150c/- |
| Rv0330c/- | (cc=0.4145) | info on Rv0330c/- |
| Rv1028c/kdpD | (cc=0.412) | info on Rv1028c/kdpD |
| Rv1687c/- | (cc=0.4103) | info on Rv1687c/- |
Correlation of Rv1055/- with Rv0330c/-
Normalized LFCs for Rv1055/-:
(description and provenance of datasets)
| Rv1055/- | Rv0330c/- | |
| Fe_supp_jason_reseq | -1.255 | -0.589 |
| low_pH_jason_reseq | 0.579 | -0.845 |
| NO_jason_reseq | 0.063 | 0.599 |
| B6_jason_reseq | 1.11 | 0.089 |
| MHCII_jason_reseq | -2.503 | -0.109 |
| Isoniazid02 | 0.444 | -1.12 |
| Rifampicin4 | -1.362 | 0.449 |
| Ethambutol3 | -0.22 | 0.557 |
| Meropenem3 | -0.464 | -1.634 |
| Vancomycin16 | 0.218 | -0.57 |
| Rv2680_day32 | -2.73 | -0.49 |
| H37Rv_KO_MarP | 2.069 | 0.715 |
| hypoxia_3wks | 0.678 | 0.183 |
| hypoxia_6wks | 0.269 | -0.025 |
| glycerol | -1.204 | 0.404 |
| cholesterol | 0.324 | 0.161 |
| AJ | 0.477 | 0.686 |
| Bibs02 | -1.325 | 0.507 |
| Bibs02c | -0.252 | 0.5 |
| BL6 | -1.995 | -0.251 |
| BL6a | 0.172 | 0.0 |
| BXD01 | -2.078 | -0.411 |
| BXD010 | -1.799 | -0.53 |
| BXD011 | -0.059 | -0.385 |
| BXD03 | 1.511 | -0.052 |
| BXD04 | -1.537 | -0.48 |
| BXD05 | -1.32 | -0.584 |
| BXD06 | -0.422 | -0.246 |
| BXD07 | -1.529 | -0.331 |
| BXD08 | -1.653 | -0.648 |
| BXD09 | -0.783 | -0.425 |
| CAST | 0.474 | -0.097 |
| CCcont | -2.382 | -0.41 |
| DS01 | 1.456 | 0.864 |
| DS02 | -0.558 | 0.55 |
| DS04 | 0.249 | -0.706 |
| DS0c | 1.496 | 0.519 |
| GP01 | 0.448 | 0.228 |
| GP02 | -0.919 | -0.206 |
| GP0c | 0.882 | -0.045 |
| NOD | 0.918 | 0.462 |
| NZO | -1.035 | -0.24 |
| PWK | -1.512 | -0.183 |
| H37Rv_KO_CtpC | -2.019 | -0.639 |
| H37Rv_KO_CtpD | -1.673 | -0.57 |
| H37Rv_KO_Rv1272 | -1.652 | -0.059 |
| H37Rv_KO_SugABC | -1.308 | -0.38 |
| H37Rv_KO_MbtN | -1.541 | -1.578 |
| Trans05 | 2.805 | 0.637 |
| macrophage_unactivated | -2.396 | 0.344 |
| IL1 | 2.225 | 0.578 |
| Rapamycin | 4.996 | 1.043 |
| Tcell | 1.763 | -0.244 |
| GMCSF | 2.891 | 0.966 |
| IFNab | -0.417 | 0.438 |
| IFNg | 0.644 | 0.676 |
| IFNg_GMCSF1 | 1.973 | 0.688 |
| Rv1432_day32 | 0.0 | 0.02 |
| Rv1565c_day32 | 0.0 | 1.057 |
| secA2_input | -3.496 | 1.14 |
| delta_Rv3594 | 4.061 | 0.213 |
| delta_Rv3717 | 3.989 | -0.204 |
| delta_Rv3811 | 1.139 | -0.141 |
| delta_Rv0954 | 4.679 | 0.162 |
| PonA1 | 0.675 | 0.87 |
| EccD1_KO | 1.204 | 0.668 |
| EspI_KO | 0.265 | -0.376 |
| PE35_KO | -1.435 | -0.242 |
| PPE68_KO | -0.429 | -0.352 |
| glycerol2 | -1.684 | -0.233 |
| lignocerate | -1.464 | 0.09 |
| oleate | -1.704 | -0.282 |
| phosphatidylcholine | -1.683 | -0.118 |
| acetate | -1.998 | -0.515 |
| glucAc | -1.242 | -0.226 |
| Rv0950ko | 3.706 | 0.35 |
| Rv1096ko | 3.706 | 1.025 |
| Rv3684ko | 0.0 | 0.966 |
| delta_otsA_trehalose | 0.699 | 0.664 |