Top 10 genes with highest correlation to Rv1055/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2219A/- | (cc=0.5622) | info on Rv2219A/- |
| Rv1026/- | (cc=0.484) | info on Rv1026/- |
| Rv3084/lipR | (cc=0.4666) | info on Rv3084/lipR |
| Rv0677c/mmpS5 | (cc=0.4637) | info on Rv0677c/mmpS5 |
| Rv2133c/- | (cc=0.4446) | info on Rv2133c/- |
| Rv3334/- | (cc=0.4336) | info on Rv3334/- |
| Rv0150c/- | (cc=0.4309) | info on Rv0150c/- |
| Rv0330c/- | (cc=0.4145) | info on Rv0330c/- |
| Rv1028c/kdpD | (cc=0.412) | info on Rv1028c/kdpD |
| Rv1687c/- | (cc=0.4103) | info on Rv1687c/- |
Correlation of Rv1055/- with Rv2219A/-
Normalized LFCs for Rv1055/-:
(description and provenance of datasets)
| Rv1055/- | Rv2219A/- | |
| Fe_supp_jason_reseq | -1.255 | 1.034 |
| low_pH_jason_reseq | 0.579 | -0.391 |
| NO_jason_reseq | 0.063 | 0.919 |
| B6_jason_reseq | 1.11 | 0.078 |
| MHCII_jason_reseq | -2.503 | 0.618 |
| Isoniazid02 | 0.444 | 0.23 |
| Rifampicin4 | -1.362 | 0.273 |
| Ethambutol3 | -0.22 | -0.105 |
| Meropenem3 | -0.464 | 0.025 |
| Vancomycin16 | 0.218 | 0.47 |
| Rv2680_day32 | -2.73 | 0.0 |
| H37Rv_KO_MarP | 2.069 | -0.645 |
| hypoxia_3wks | 0.678 | -0.12 |
| hypoxia_6wks | 0.269 | -0.612 |
| glycerol | -1.204 | -2.256 |
| cholesterol | 0.324 | 0.718 |
| AJ | 0.477 | 0.277 |
| Bibs02 | -1.325 | -2.963 |
| Bibs02c | -0.252 | -1.928 |
| BL6 | -1.995 | 1.874 |
| BL6a | 0.172 | -0.521 |
| BXD01 | -2.078 | -0.257 |
| BXD010 | -1.799 | -1.896 |
| BXD011 | -0.059 | -0.301 |
| BXD03 | 1.511 | 0.212 |
| BXD04 | -1.537 | 0.502 |
| BXD05 | -1.32 | 0.235 |
| BXD06 | -0.422 | -0.087 |
| BXD07 | -1.529 | 0.349 |
| BXD08 | -1.653 | 0.854 |
| BXD09 | -0.783 | 0.233 |
| CAST | 0.474 | 0.542 |
| CCcont | -2.382 | 0.164 |
| DS01 | 1.456 | 1.042 |
| DS02 | -0.558 | -3.039 |
| DS04 | 0.249 | 1.862 |
| DS0c | 1.496 | 0.866 |
| GP01 | 0.448 | -1.198 |
| GP02 | -0.919 | -0.122 |
| GP0c | 0.882 | 0.284 |
| NOD | 0.918 | 0.311 |
| NZO | -1.035 | -1.942 |
| PWK | -1.512 | -2.516 |
| H37Rv_KO_CtpC | -2.019 | -1.815 |
| H37Rv_KO_CtpD | -1.673 | -0.619 |
| H37Rv_KO_Rv1272 | -1.652 | -3.378 |
| H37Rv_KO_SugABC | -1.308 | 1.221 |
| H37Rv_KO_MbtN | -1.541 | -1.399 |
| Trans05 | 2.805 | 0.612 |
| macrophage_unactivated | -2.396 | 1.736 |
| IL1 | 2.225 | 0.715 |
| Rapamycin | 4.996 | 1.004 |
| Tcell | 1.763 | -0.495 |
| GMCSF | 2.891 | 1.568 |
| IFNab | -0.417 | -0.079 |
| IFNg | 0.644 | 0.673 |
| IFNg_GMCSF1 | 1.973 | -0.342 |
| Rv1432_day32 | 0.0 | 0.22 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | -3.496 | -2.505 |
| delta_Rv3594 | 4.061 | 4.281 |
| delta_Rv3717 | 3.989 | 4.031 |
| delta_Rv3811 | 1.139 | 2.501 |
| delta_Rv0954 | 4.679 | 2.821 |
| PonA1 | 0.675 | 3.869 |
| EccD1_KO | 1.204 | 2.056 |
| EspI_KO | 0.265 | 0.642 |
| PE35_KO | -1.435 | 0.245 |
| PPE68_KO | -0.429 | -0.112 |
| glycerol2 | -1.684 | -1.34 |
| lignocerate | -1.464 | -0.173 |
| oleate | -1.704 | -0.895 |
| phosphatidylcholine | -1.683 | -0.884 |
| acetate | -1.998 | -0.377 |
| glucAc | -1.242 | -0.804 |
| Rv0950ko | 3.706 | 2.108 |
| Rv1096ko | 3.706 | 2.986 |
| Rv3684ko | 0.0 | 0.331 |
| delta_otsA_trehalose | 0.699 | 2.077 |