TnSeqCorr

Top 10 genes with highest correlation to Rv1019/-:

update plotcorrelationlink to info on gene
Rv2224c/caeA (cc=0.5354) info on Rv2224c/caeA
Rv0806c/cpsY (cc=0.5198) info on Rv0806c/cpsY
Rv2609c/- (cc=0.5143) info on Rv2609c/-
Rv3868/eccA1 (cc=0.5078) info on Rv3868/eccA1
Rv2404c/lepA (cc=0.5022) info on Rv2404c/lepA
Rv2366c/- (cc=0.4929) info on Rv2366c/-
Rv1829/- (cc=0.4863) info on Rv1829/-
Rv0056/rplI (cc=0.4819) info on Rv0056/rplI
Rv1109c/- (cc=0.4776) info on Rv1109c/-
Rv0353/hspR (cc=0.4747) info on Rv0353/hspR

Correlation of Rv1019/- with Rv2224c/caeA

Normalized LFCs for Rv1019/-:
(description and provenance of datasets)
Rv1019/-Rv2224c/caeA
Fe_supp_jason_reseq

1.047

2.788

low_pH_jason_reseq

-0.607

0.545

NO_jason_reseq

-2.042

-3.87

B6_jason_reseq

-0.973

-1.175

MHCII_jason_reseq

-0.276

-0.49

Isoniazid02

0.106

-0.081

Rifampicin4

-0.847

-6.0

Ethambutol3

-0.106

-3.633

Meropenem3

-2.205

-4.666

Vancomycin16

-1.769

-6.0

Rv2680_day32

0.349

-2.43

H37Rv_KO_MarP

1.136

-4.312

hypoxia_3wks

-2.416

-3.465

hypoxia_6wks

-2.203

-2.907

glycerol

-0.281

1.659

cholesterol

-0.061

2.409

AJ

-2.086

-3.629

Bibs02

-0.342

-2.044

Bibs02c

-0.599

-2.537

BL6

-0.764

0.28

BL6a

-0.603

-1.53

BXD01

-0.804

-1.646

BXD010

-0.512

-0.061

BXD011

0.018

-0.338

BXD03

-1.507

-1.393

BXD04

-1.217

-1.562

BXD05

-0.805

-0.357

BXD06

0.049

-1.375

BXD07

-0.329

-0.94

BXD08

-1.24

-1.68

BXD09

0.72

-0.553

CAST

-4.123

-3.947

CCcont

-0.635

2.729

DS01

-1.785

-3.535

DS02

-2.317

-1.679

DS04

-0.469

-1.563

DS0c

-1.351

-2.857

GP01

0.371

-0.67

GP02

-0.611

-1.495

GP0c

-0.186

0.932

NOD

-1.038

-2.958

NZO

-1.397

-3.585

PWK

-3.923

-3.704

H37Rv_KO_CtpC

-2.272

0.146

H37Rv_KO_CtpD

-0.806

-0.557

H37Rv_KO_Rv1272

-1.571

0.467

H37Rv_KO_SugABC

-0.821

-0.587

H37Rv_KO_MbtN

0.835

1.022

Trans05

0.188

0.292

macrophage_unactivated

0.281

-0.881

IL1

1.299

0.098

Rapamycin

1.851

-0.034

Tcell

-0.016

-1.61

GMCSF

-0.451

-1.648

IFNab

-0.535

1.575

IFNg

0.142

-1.24

IFNg_GMCSF1

-0.792

-1.653

Rv1432_day32

-2.066

-3.245

Rv1565c_day32

-1.287

-0.218

secA2_input

0.676

-0.266

delta_Rv3594

0.329

0.797

delta_Rv3717

2.416

0.213

delta_Rv3811

0.932

0.464

delta_Rv0954

0.787

0.72

PonA1

-0.196

-3.854

EccD1_KO

-0.316

-0.013

EspI_KO

0.277

0.04

PE35_KO

-1.149

-1.948

PPE68_KO

0.0

-0.614

glycerol2

1.83

-2.159

lignocerate

-2.468

-2.67

oleate

-2.874

-3.797

phosphatidylcholine

-2.182

-3.751

acetate

0.598

0.444

glucAc

-0.117

0.0

Rv0950ko

0.452

-1.019

Rv1096ko

0.495

1.043

Rv3684ko

0.727

1.097

delta_otsA_trehalose

-0.715

0.04