TnSeqCorr

Top 10 genes with highest correlation to Rv0985c/mscL:

update plotcorrelationlink to info on gene
Rv3651/- (cc=0.6364) info on Rv3651/-
Rv3607c/folB (cc=0.6142) info on Rv3607c/folB
Rv2014/- (cc=0.6021) info on Rv2014/-
Rv3328c/sigJ (cc=0.5879) info on Rv3328c/sigJ
Rv1182/papA3 (cc=0.5828) info on Rv1182/papA3
Rv0984/moaB2 (cc=0.5721) info on Rv0984/moaB2
Rv2741/PE_PGRS47 (cc=0.5712) info on Rv2741/PE_PGRS47
Rv0079/- (cc=0.5603) info on Rv0079/-
Rv1676/- (cc=0.548) info on Rv1676/-
Rv1646/PE17 (cc=0.5406) info on Rv1646/PE17

Correlation of Rv0985c/mscL with Rv1646/PE17

Normalized LFCs for Rv0985c/mscL:
(description and provenance of datasets)
Rv0985c/mscLRv1646/PE17
Fe_supp_jason_reseq

-0.2

0.358

low_pH_jason_reseq

0.597

-0.348

NO_jason_reseq

-0.593

0.181

B6_jason_reseq

-0.109

0.787

MHCII_jason_reseq

0.374

0.025

Isoniazid02

0.042

0.661

Rifampicin4

0.563

0.439

Ethambutol3

0.186

0.48

Meropenem3

0.096

-0.279

Vancomycin16

-0.151

-0.167

Rv2680_day32

0.223

0.621

H37Rv_KO_MarP

0.279

-0.195

hypoxia_3wks

-2.536

0.267

hypoxia_6wks

-0.739

-0.654

glycerol

0.889

0.329

cholesterol

0.508

0.325

AJ

0.553

0.948

Bibs02

1.672

0.13

Bibs02c

1.34

0.606

BL6

-0.157

-0.783

BL6a

0.188

0.445

BXD01

-0.865

0.031

BXD010

-0.396

-0.225

BXD011

-0.69

-0.667

BXD03

-1.197

-0.788

BXD04

-1.516

0.394

BXD05

-1.172

-0.054

BXD06

-0.951

-0.508

BXD07

-0.184

-0.498

BXD08

-1.049

0.082

BXD09

-0.853

-0.457

CAST

1.306

1.018

CCcont

0.098

-0.333

DS01

1.357

0.631

DS02

1.486

0.597

DS04

0.537

0.396

DS0c

1.537

1.196

GP01

0.059

0.043

GP02

1.022

0.312

GP0c

0.946

0.025

NOD

1.695

0.765

NZO

-0.038

0.525

PWK

0.22

0.479

H37Rv_KO_CtpC

0.245

0.071

H37Rv_KO_CtpD

0.106

-0.623

H37Rv_KO_Rv1272

0.604

-0.306

H37Rv_KO_SugABC

-1.654

-0.135

H37Rv_KO_MbtN

-0.046

0.468

Trans05

-0.483

-0.072

macrophage_unactivated

-0.821

-0.729

IL1

-1.083

-1.103

Rapamycin

-0.988

-1.264

Tcell

-1.483

-0.026

GMCSF

-1.328

-0.855

IFNab

-1.521

-1.403

IFNg

-3.421

-1.213

IFNg_GMCSF1

-0.691

-0.698

Rv1432_day32

-0.052

-0.339

Rv1565c_day32

-0.231

-0.488

secA2_input

-0.178

-0.067

delta_Rv3594

0.783

0.219

delta_Rv3717

0.018

-0.447

delta_Rv3811

0.669

0.089

delta_Rv0954

1.009

-0.167

PonA1

0.464

0.194

EccD1_KO

-0.27

0.49

EspI_KO

0.724

0.351

PE35_KO

0.618

0.397

PPE68_KO

0.71

0.873

glycerol2

0.605

0.573

lignocerate

-0.056

0.32

oleate

0.532

0.763

phosphatidylcholine

0.248

0.882

acetate

-0.236

-0.253

glucAc

-0.593

-0.363

Rv0950ko

-0.299

0.606

Rv1096ko

-0.374

-0.817

Rv3684ko

-0.616

-0.321

delta_otsA_trehalose

1.163

-1.123