Top 10 genes with highest correlation to Rv0840c/pip:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2681/- | (cc=0.671) | info on Rv2681/- |
| Rv2559c/- | (cc=0.6076) | info on Rv2559c/- |
| Rv1180/pks3 | (cc=0.6006) | info on Rv1180/pks3 |
| Rv1453/- | (cc=0.5967) | info on Rv1453/- |
| Rv1986/- | (cc=0.5942) | info on Rv1986/- |
| Rv1815/- | (cc=0.593) | info on Rv1815/- |
| Rv3354/- | (cc=0.5913) | info on Rv3354/- |
| Rv1140/- | (cc=0.5912) | info on Rv1140/- |
| Rv1070c/echA8 | (cc=0.5897) | info on Rv1070c/echA8 |
| Rv1708/- | (cc=0.5811) | info on Rv1708/- |
Correlation of Rv0840c/pip with Rv1708/-
Normalized LFCs for Rv0840c/pip:
(description and provenance of datasets)
| Rv0840c/pip | Rv1708/- | |
| Fe_supp_jason_reseq | 0.188 | 0.415 |
| low_pH_jason_reseq | -0.179 | 0.231 |
| NO_jason_reseq | -0.11 | 0.362 |
| B6_jason_reseq | 0.235 | 1.59 |
| MHCII_jason_reseq | 1.249 | 1.501 |
| Isoniazid02 | 1.206 | 0.0 |
| Rifampicin4 | -0.014 | -0.341 |
| Ethambutol3 | 1.4 | 0.14 |
| Meropenem3 | 0.355 | -0.151 |
| Vancomycin16 | -0.305 | -0.334 |
| Rv2680_day32 | 0.455 | 0.078 |
| H37Rv_KO_MarP | 0.567 | 0.313 |
| hypoxia_3wks | -0.311 | -0.427 |
| hypoxia_6wks | -0.163 | -0.727 |
| glycerol | -0.829 | -0.607 |
| cholesterol | -0.447 | -0.246 |
| AJ | -0.363 | -0.866 |
| Bibs02 | 0.172 | -0.55 |
| Bibs02c | 0.8 | -0.941 |
| BL6 | -0.557 | -0.906 |
| BL6a | 0.017 | -1.435 |
| BXD01 | -0.899 | -0.695 |
| BXD010 | -0.973 | -0.928 |
| BXD011 | -0.923 | -0.923 |
| BXD03 | -0.402 | -0.98 |
| BXD04 | -0.779 | -0.896 |
| BXD05 | -1.08 | -0.975 |
| BXD06 | -1.231 | -0.967 |
| BXD07 | -1.201 | -1.003 |
| BXD08 | -0.659 | -0.963 |
| BXD09 | -0.39 | -1.018 |
| CAST | -0.095 | -0.859 |
| CCcont | -0.209 | -1.082 |
| DS01 | 0.72 | 0.346 |
| DS02 | 0.194 | 0.922 |
| DS04 | 0.921 | 0.284 |
| DS0c | 0.676 | 0.596 |
| GP01 | -0.938 | -0.715 |
| GP02 | -0.244 | -0.603 |
| GP0c | -0.562 | -0.585 |
| NOD | 0.254 | -0.381 |
| NZO | -0.444 | -0.6 |
| PWK | -0.865 | 0.099 |
| H37Rv_KO_CtpC | -1.366 | -1.014 |
| H37Rv_KO_CtpD | -0.08 | -0.918 |
| H37Rv_KO_Rv1272 | -0.239 | -1.022 |
| H37Rv_KO_SugABC | -0.256 | -0.529 |
| H37Rv_KO_MbtN | 0.202 | -0.644 |
| Trans05 | -0.559 | -0.144 |
| macrophage_unactivated | -0.379 | -0.83 |
| IL1 | -1.267 | -0.78 |
| Rapamycin | -0.638 | -0.807 |
| Tcell | -0.984 | -0.857 |
| GMCSF | -0.082 | -0.694 |
| IFNab | -0.846 | -0.795 |
| IFNg | -0.708 | -0.703 |
| IFNg_GMCSF1 | -0.44 | -0.396 |
| Rv1432_day32 | -0.501 | 0.0 |
| Rv1565c_day32 | 0.951 | 0.0 |
| secA2_input | -0.077 | -0.377 |
| delta_Rv3594 | -0.627 | -0.315 |
| delta_Rv3717 | -0.753 | 0.331 |
| delta_Rv3811 | -0.706 | 0.918 |
| delta_Rv0954 | -0.136 | -0.756 |
| PonA1 | -0.274 | -0.516 |
| EccD1_KO | 1.089 | 0.73 |
| EspI_KO | 1.286 | 1.435 |
| PE35_KO | 0.665 | 0.335 |
| PPE68_KO | 0.784 | 0.368 |
| glycerol2 | 0.031 | 0.338 |
| lignocerate | -0.013 | 0.0 |
| oleate | -0.04 | 0.179 |
| phosphatidylcholine | 0.113 | 0.176 |
| acetate | -0.254 | 0.743 |
| glucAc | 0.045 | -0.143 |
| Rv0950ko | 0.431 | -0.669 |
| Rv1096ko | 0.22 | 0.302 |
| Rv3684ko | -0.36 | 0.632 |
| delta_otsA_trehalose | 1.128 | 0.654 |