Top 10 genes with highest correlation to Rv0840c/pip:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2681/- | (cc=0.671) | info on Rv2681/- |
| Rv2559c/- | (cc=0.6076) | info on Rv2559c/- |
| Rv1180/pks3 | (cc=0.6006) | info on Rv1180/pks3 |
| Rv1453/- | (cc=0.5967) | info on Rv1453/- |
| Rv1986/- | (cc=0.5942) | info on Rv1986/- |
| Rv1815/- | (cc=0.593) | info on Rv1815/- |
| Rv3354/- | (cc=0.5913) | info on Rv3354/- |
| Rv1140/- | (cc=0.5912) | info on Rv1140/- |
| Rv1070c/echA8 | (cc=0.5897) | info on Rv1070c/echA8 |
| Rv1708/- | (cc=0.5811) | info on Rv1708/- |
Correlation of Rv0840c/pip with Rv1140/-
Normalized LFCs for Rv0840c/pip:
(description and provenance of datasets)
| Rv0840c/pip | Rv1140/- | |
| Fe_supp_jason_reseq | 0.188 | 0.59 |
| low_pH_jason_reseq | -0.179 | 0.626 |
| NO_jason_reseq | -0.11 | -0.142 |
| B6_jason_reseq | 0.235 | -0.403 |
| MHCII_jason_reseq | 1.249 | 2.535 |
| Isoniazid02 | 1.206 | 1.574 |
| Rifampicin4 | -0.014 | 0.872 |
| Ethambutol3 | 1.4 | 1.031 |
| Meropenem3 | 0.355 | 0.682 |
| Vancomycin16 | -0.305 | 1.005 |
| Rv2680_day32 | 0.455 | 1.175 |
| H37Rv_KO_MarP | 0.567 | 0.066 |
| hypoxia_3wks | -0.311 | -0.654 |
| hypoxia_6wks | -0.163 | -1.27 |
| glycerol | -0.829 | 0.709 |
| cholesterol | -0.447 | 1.2 |
| AJ | -0.363 | 0.124 |
| Bibs02 | 0.172 | 0.494 |
| Bibs02c | 0.8 | 2.387 |
| BL6 | -0.557 | -1.006 |
| BL6a | 0.017 | 0.696 |
| BXD01 | -0.899 | -0.168 |
| BXD010 | -0.973 | -0.708 |
| BXD011 | -0.923 | -1.367 |
| BXD03 | -0.402 | -1.944 |
| BXD04 | -0.779 | -0.413 |
| BXD05 | -1.08 | -1.02 |
| BXD06 | -1.231 | -0.895 |
| BXD07 | -1.201 | -1.113 |
| BXD08 | -0.659 | -1.102 |
| BXD09 | -0.39 | -0.534 |
| CAST | -0.095 | -1.45 |
| CCcont | -0.209 | 0.0 |
| DS01 | 0.72 | 2.236 |
| DS02 | 0.194 | 1.128 |
| DS04 | 0.921 | 0.912 |
| DS0c | 0.676 | 2.325 |
| GP01 | -0.938 | -0.748 |
| GP02 | -0.244 | -1.063 |
| GP0c | -0.562 | 0.317 |
| NOD | 0.254 | 0.024 |
| NZO | -0.444 | -1.178 |
| PWK | -0.865 | -1.12 |
| H37Rv_KO_CtpC | -1.366 | -1.159 |
| H37Rv_KO_CtpD | -0.08 | 0.12 |
| H37Rv_KO_Rv1272 | -0.239 | -0.916 |
| H37Rv_KO_SugABC | -0.256 | -0.393 |
| H37Rv_KO_MbtN | 0.202 | 0.108 |
| Trans05 | -0.559 | -1.403 |
| macrophage_unactivated | -0.379 | 0.843 |
| IL1 | -1.267 | -1.391 |
| Rapamycin | -0.638 | -0.166 |
| Tcell | -0.984 | -0.857 |
| GMCSF | -0.082 | -0.449 |
| IFNab | -0.846 | -0.605 |
| IFNg | -0.708 | -0.144 |
| IFNg_GMCSF1 | -0.44 | 0.163 |
| Rv1432_day32 | -0.501 | -0.276 |
| Rv1565c_day32 | 0.951 | 1.728 |
| secA2_input | -0.077 | -0.086 |
| delta_Rv3594 | -0.627 | 1.446 |
| delta_Rv3717 | -0.753 | 0.225 |
| delta_Rv3811 | -0.706 | 0.717 |
| delta_Rv0954 | -0.136 | 0.292 |
| PonA1 | -0.274 | 1.402 |
| EccD1_KO | 1.089 | 1.46 |
| EspI_KO | 1.286 | 0.262 |
| PE35_KO | 0.665 | 1.543 |
| PPE68_KO | 0.784 | 1.309 |
| glycerol2 | 0.031 | 0.553 |
| lignocerate | -0.013 | 0.373 |
| oleate | -0.04 | 0.218 |
| phosphatidylcholine | 0.113 | 0.766 |
| acetate | -0.254 | 0.442 |
| glucAc | 0.045 | 0.395 |
| Rv0950ko | 0.431 | 0.706 |
| Rv1096ko | 0.22 | -0.452 |
| Rv3684ko | -0.36 | -0.436 |
| delta_otsA_trehalose | 1.128 | -2.085 |